View source for Team H(oo)KD Final Project Deliverables

{{Team H(oo)KD}}

==Deliverables==

*Gene database for ''Chlamydia trachomatis'' A/HAR-13 (.gdb): [[Media:Ct-Std External 20131121.gdb|Ct-Std_External_20131121.gdb]]
*ReadMe file including the gene database schema:[[Media:ReadMe Ct-Std External 20131122.pdf|ReadMe_Ct-Std_External_20131122.pdf]]
*Gene database testing report: [[Media:Ct External 20131121 Gene Database Testing Report.pdf|Ct_External_20131121_Gene_Database_Testing_Report.pdf]]
*Processed and analyzed DNA microarray dataset (.xls):
*GenMAPP Expression Dataset file (.gex):
:*For data collected in absence of rifampicin: [[Media: For GenMAPP Chlamydia V4 20131205 KS.gex|For_GenMAPP_Absence_of_Rifampicin.gex]]
:*For data collected in presence of rifampicin: [[Media:For GenMAPP Chlamydia V4 20131212 KS Presence of Rifampicin.gex|For_GenMAPP Chlamydia_V4_20131212_KS_Presence_of_Rifampicin.gex]]
*Filtered MAPPFinder Results (.xls):
*[[Media: EB to RB No Rif 20131207 KS DW-Criterion0-GO.xls|EB to RB No Rif Increased]]
*[[Media: EB to RB No Rif 20131207 KS DW-Criterion1-GO.xls|EB to RB No Rif decreased]]
*[[Media: MAPPFinder Results EB to RB Rifampicin 20131212-Criterion0-GO (1).xls ‎| EB to RB Rif Increased]]
*[[Media:EB to RB No Rif 20131207 KS DW-Criterion1-GO.xls|EB to RB No Rif decreased]]
*Sample MAPP file of a relevant biological pathway for your species (.mapp):[[Media:EBtoRB_Rifampicin_Cellular_Carbohydrate_Metabolic_Process.mapp]]
:*Picture of the MAPP (.jpeg):[[Media:EBtoRB Rifampicin Cellular Carbohydrate Metabolic Process.jpg]]
*Group Report (.pdf):
*PowerPoint presentation (given on Thursday, December 12): [[Media:Transcriptional_Analysis_of_the_Developmental_Stages_of_Chlamydia_trachomatis_A_HAR-13_HDKSDW_20131212.pdf|Transcriptional_Analysis_of_the_Developmental_Stages_of_Chlamydia_trachomatis_A_HAR-13_HDKSDW_20131212.pdf]]