View source for Team H(oo)KD Week 13 Status Report

===Status Report===
Milestone 2
Read the microarray paper to understand the experiment.
*Read Microarray Paper to understand experiment and find relations between raw data and article.
Create a table or list that shows the correspondence between the samples in the experiment and the files you have downloaded.
*Downloaded sdrf file and opened in excel to determine list that shows correspondence between samples in experiment and raw data file downloaded.
Determine how many biological or technical replicates, and which samples were labeled with Cy3 or Cy5.
*Determined 4 replicates based on article and data.
Create a Master Raw Data file that contains the IDs and columns of data required for further analysis.
*Created [[Media: Master Spreadsheet.xls|Master Spreadsheet]] and uploaded it to team wiki.
Consult with Dr. Dahlquist on how to process the data (normalization, statistics).
*Consulted with Dr. Dahlquist on how to process data and recorded steps in [[Dwilliams Project Notebook|Project Notebook]].