https://xmlpipedb.lmucs.io/biodb/fall2013/index.php?action=history&feed=atom&title=Gleis_Week_3Gleis Week 3 - Revision history2026-04-23T19:39:17ZRevision history for this page on the wikiMediaWiki 1.20.3https://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Gleis_Week_3&diff=1679&oldid=prevGleis: Added category2013-09-17T05:20:01Z<p>Added category</p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[User:Gleis|Gleis]] ([[User talk:Gleis|talk]]) 22:18, 16 September 2013 (PDT)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[User:Gleis|Gleis]] ([[User talk:Gleis|talk]]) 22:18, 16 September 2013 (PDT)</div></td></tr>
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</table>Gleishttps://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Gleis_Week_3&diff=1678&oldid=prevGleis at 05:18, 17 September 20132013-09-17T05:18:45Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>-3 cat sequence_file | sed "y/atgc/tacg/" | rev | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>-3 cat sequence_file | sed "y/atgc/tacg/" | rev | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed</div></td></tr>
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</table>Gleishttps://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Gleis_Week_3&diff=1677&oldid=prevGleis at 05:18, 17 September 20132013-09-17T05:18:18Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>-3 cat sequence_file | sed "y/atgc/tacg/" | rev | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>-3 cat sequence_file | sed "y/atgc/tacg/" | rev | sed "s/^..//g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed</div></td></tr>
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</table>Gleishttps://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Gleis_Week_3&diff=1466&oldid=prevGleis: /* XMLPIPEDB MATCH */ finished match practice2013-09-12T18:44:09Z<p><span dir="auto"><span class="autocomment">XMLPIPEDB MATCH: </span> finished match practice</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==XMLPIPEDB MATCH==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==XMLPIPEDB MATCH==</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">#</del>What Match command tallies the occurrences of the pattern GO:000916. in the 493.P_falciparum.xml file?</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">1. </ins>What Match command tallies the occurrences of the pattern GO:000916. in the 493.P_falciparum.xml file?</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>:* Two unique matches</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>:* Two unique matches</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>:* First unique match <del class="diffchange diffchange-inline">occured </del>twice. Second match <del class="diffchange diffchange-inline">occured </del>once</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>:* First unique match <ins class="diffchange diffchange-inline">occurred </ins>twice. Second match <ins class="diffchange diffchange-inline">occurred </ins>once</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">:* GO:000916 possibly represents a sequence identification number for a portion of a protein sequence.</ins></div></td></tr>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">2. What Match command tallies the occurrences of the pattern \"James.*\" in the 493.P_falciparum.xml file? </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">:* Two unique matches</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">:* The first unique match occurred 8283 times and the second unique match occurred once.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">:* \"James.*\" likely refers to the last name of an author in a journal article.</ins></div></td></tr>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">3. Use Match to count the occurrences of the pattern ATG in the hs_ref_GRCh37_chr19.fa file (this may take a while). Then, use grep and wc to do the same thing. </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">:*830101</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">:*502410</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">:*The answers make sense because grep wc will only count the occurrence of ATG once per line even if ATG occurs more than once.</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==The Genetic Code, By Computer==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==The Genetic Code, By Computer==</div></td></tr>
</table>Gleis
==XMLPIPEDB MATCH==
==XMLPIPEDB MATCH==
#What Match command tallies the occurrences of the pattern GO:000916. in the 493.P_falciparum.xml file?
#What Match command tallies the occurrences of the pattern GO:000916. in the 493.P_falciparum.xml file?