Gleis Week 4 - Revision history

Gleis at 04:26, 20 September 2013

2013-09-20T04:26:12Z

Gleis: added signature

2013-09-20T04:25:54Z

added signature

Gleis: added category

2013-09-20T04:24:46Z

added category

Gleis: Added week 4 assignment

2013-09-20T04:12:46Z

Added week 4 assignment

Gleis: Created page with "=="Taken to the Next Level"== # :a) ttttcaccacaagaatgaatgttttcggcacatttctccccagagtgttataattgcg gtcgcagagttggttacgctcattaccccgctgccgataaggaatttttcgc gtcaggtaacgcccatcgtttatctc..."

2013-09-20T04:12:14Z

Created page with "=="Taken to the Next Level"== # :a) ttttcaccacaagaatgaatgttttcggcacatttctccccagagtgttataattgcg gtcgcagagttggttacgctcattaccccgctgccgataaggaatttttcgc gtcaggtaacgcccatcgtttatctc..."

New page

=="Taken to the Next Level"==
#
:a) ttttcaccacaagaatgaatgttttcggcacatttctccccagagtgttataattgcg
gtcgcagagttggttacgctcattaccccgctgccgataaggaatttttcgc
gtcaggtaacgcccatcgtttatctcaccgctcccttatacgttgcgcttttggtgcggcttagccgtgtgttttcggagtaatgtgccgaacctgtttgttgcgatttagcgcgcaaatc <minus35box>tttact</minus35box> tatttacagaacttcgg <minus10box>cattat</minus10box> cttgcc<tss> g</tss> gttcaaattacggtagtgatacccca <rbs>gagg</rbs>
attag <start_codon>atg</start_codon> gccaaagaagacaatat <stop_codon>tga</stop_codon> aatgcaaggtaccgttcttgaaacgttgcctaataccatgttc
cgcgtagagttagaaaacggtcacgtggttactgcacacatctccggtaaaatgcgcaaaaactacatccgcatcctgacgggcgacaaagtga
ctgttgaactgaccccgtacgacctgagcaaaggccgcattgtcttccgtagtcgctgattgttttaccgcctgatgggcgaagagaaagaacgagtaaaaggtcggtttaaccg <terminator>gcctttttatt</terminator> tta
:b) cat infA-E.coli-K12.txt | sed "s/cat[at]at/ <minus10box>&<\/minus10box> /g" | sed -r "s/.{17} <minus10/<\/minus35box> &/g" | sed "s/tt[gt]ac[at]<\/minus35box>/ <minus35box>&/g" | sed "s/gagg/ <rbs>&<\/rbs> /g" | sed "s/<\/rbs>/&\n/g" | sed "2s/.../&/g" | sed "2s/atg/ <start_codon>&<\/start_codon> /1" | sed -r "s/.{26} <rbs/<\/tss> &/g" | sed -r "s/.<\/tss/<tss> &/g" | sed "2s/gcctttt..../ <terminator>&<\/terminator> /g" | sed "2s/t[ag][ag]/ <stop_codon>&<\/stop_codon> /g"
2
a)gguucaaauuacgguagugauaccccagaggauauggccaaagaagacaauauugaaaugcaagguaccguucuugaaacguugccuaauaccau
guuccgcguagaguuagaaaacggucacgugguuacugcacaca
ucuccgguaaaaugcgcaaaaacuacauccgcauccugacgggcgacaaagugacuguugaacug
accccguacgaccugagcaaaggccgcauugucuuccguagucgcugauuguuuuaccgccugaugggcgaagagaaagaacgaguaaaaggucgguuuaaccggccuuuuuauu

b) cat infA-E.coli-K12.txt | sed "s/cat[at]at/ <minus10box>&<\/minus10box> /g" | sed -r "s/.{17} <minus10/<\/minus35box> &/g" | sed "s/tt[gt]ac[at]<\/minus35box>/ <minus35box>&/g" | sed "s/gagg/ <rbs>&<\/rbs> /g" | sed "s/<\/rbs>/&\n/g" | sed "2s/.../&/g" | sed "2s/atg/ <start_codon>&<\/start_codon> /1" | sed -r "s/.{26} <rbs/<\/tss> &/g" | sed -r "s/.<\/tss/<tss> &/g" | sed "2s/gcctttt..../ <terminator>&<\/terminator> /g" | sed "2s/t[ag][ag]/ <stop_codon>&<\/stop_codon> /2" | sed "s/t/u/g"

3
a) MPKTTI
b) cat infA-E.coli-K12.txt | sed "s/cat[at]at/ <minus10box>&<\/minus10box> /g" | sed -r "s/.{17} <minus10/<\/minus35box> &/g" | sed "s/tt[gt]ac[at]<\/minus35box>/ <minus35box>&/g" | sed "s/gagg/ <rbs>&<\/rbs> /g" | sed "s/<\/rbs>/&\n/g" | sed "2s/.../&/g" | sed "2s/atg/ <start_codon>&<\/start_codon> /1" | sed -r "s/.{26} <rbs/<\/tss> &/g" | sed -r "s/.<\/tss/<tss> &/g" | sed "2s/gcctttt..../ <terminator>&<\/terminator> /g" | sed "2s/t[ag][ag]/ <stop_codon>&<\/stop_codon> /2" | sed "s/t/u/g" | sed -f genetic-code.sed

@@ Line 21: / Line 21: @@
 b) cat infA-E.coli-K12.txt | sed "s/cat[at]at/ <minus10box>&<\/minus10box> /g" | sed -r "s/.{17} <minus10/<\/minus35box> &/g" | sed "s/tt[gt]ac[at]<\/minus35box>/ <minus35box>&/g" | sed "s/gagg/ <rbs>&<\/rbs> /g" | sed "s/<\/rbs>/&\n/g" | sed "2s/.../&/g" | sed "2s/atg/ <start_codon>&<\/start_codon> /1" | sed -r "s/.{26} <rbs/<\/tss> &/g" | sed -r "s/.<\/tss/<tss> &/g" | sed "2s/gcctttt..../ <terminator>&<\/terminator> /g" | sed "2s/t[ag][ag]/ <stop_codon>&<\/stop_codon> /2" | sed "s/t/u/g" | sed -f genetic-code.sed
-:25, 19 September 2013 (PDT)
+[[User:Gleis|Gleis]] ([[User talk:Gleis|talk]]) 21:26, 19 September 2013 (PDT)
 [[Category:Journal Entry]]

← Older revision		Revision as of 04:25, 20 September 2013
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	b) cat infA-E.coli-K12.txt \| sed "s/cat[at]at/ <minus10box>&<\/minus10box> /g" \| sed -r "s/.{17} <minus10/<\/minus35box> &/g" \| sed "s/tt[gt]ac[at]<\/minus35box>/ <minus35box>&/g" \| sed "s/gagg/ <rbs>&<\/rbs> /g" \| sed "s/<\/rbs>/&\n/g" \| sed "2s/.../&/g" \| sed "2s/atg/ <start_codon>&<\/start_codon> /1" \| sed -r "s/.{26} <rbs/<\/tss> &/g" \| sed -r "s/.<\/tss/<tss> &/g" \| sed "2s/gcctttt..../ <terminator>&<\/terminator> /g" \| sed "2s/t[ag][ag]/ <stop_codon>&<\/stop_codon> /2" \| sed "s/t/u/g" \| sed -f genetic-code.sed		b) cat infA-E.coli-K12.txt \| sed "s/cat[at]at/ <minus10box>&<\/minus10box> /g" \| sed -r "s/.{17} <minus10/<\/minus35box> &/g" \| sed "s/tt[gt]ac[at]<\/minus35box>/ <minus35box>&/g" \| sed "s/gagg/ <rbs>&<\/rbs> /g" \| sed "s/<\/rbs>/&\n/g" \| sed "2s/.../&/g" \| sed "2s/atg/ <start_codon>&<\/start_codon> /1" \| sed -r "s/.{26} <rbs/<\/tss> &/g" \| sed -r "s/.<\/tss/<tss> &/g" \| sed "2s/gcctttt..../ <terminator>&<\/terminator> /g" \| sed "2s/t[ag][ag]/ <stop_codon>&<\/stop_codon> /2" \| sed "s/t/u/g" \| sed -f genetic-code.sed
		+
		+	21:25, 19 September 2013 (PDT)

	[[Category:Journal Entry]]		[[Category:Journal Entry]]

← Older revision		Revision as of 04:24, 20 September 2013
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	b) cat infA-E.coli-K12.txt \| sed "s/cat[at]at/ <minus10box>&<\/minus10box> /g" \| sed -r "s/.{17} <minus10/<\/minus35box> &/g" \| sed "s/tt[gt]ac[at]<\/minus35box>/ <minus35box>&/g" \| sed "s/gagg/ <rbs>&<\/rbs> /g" \| sed "s/<\/rbs>/&\n/g" \| sed "2s/.../&/g" \| sed "2s/atg/ <start_codon>&<\/start_codon> /1" \| sed -r "s/.{26} <rbs/<\/tss> &/g" \| sed -r "s/.<\/tss/<tss> &/g" \| sed "2s/gcctttt..../ <terminator>&<\/terminator> /g" \| sed "2s/t[ag][ag]/ <stop_codon>&<\/stop_codon> /2" \| sed "s/t/u/g" \| sed -f genetic-code.sed		b) cat infA-E.coli-K12.txt \| sed "s/cat[at]at/ <minus10box>&<\/minus10box> /g" \| sed -r "s/.{17} <minus10/<\/minus35box> &/g" \| sed "s/tt[gt]ac[at]<\/minus35box>/ <minus35box>&/g" \| sed "s/gagg/ <rbs>&<\/rbs> /g" \| sed "s/<\/rbs>/&\n/g" \| sed "2s/.../&/g" \| sed "2s/atg/ <start_codon>&<\/start_codon> /1" \| sed -r "s/.{26} <rbs/<\/tss> &/g" \| sed -r "s/.<\/tss/<tss> &/g" \| sed "2s/gcctttt..../ <terminator>&<\/terminator> /g" \| sed "2s/t[ag][ag]/ <stop_codon>&<\/stop_codon> /2" \| sed "s/t/u/g" \| sed -f genetic-code.sed
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		+	[[Category:Journal Entry]]

← Older revision		Revision as of 04:12, 20 September 2013
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	3		3
	a) MPKTTI		a) MPKTTI
		+
	b) cat infA-E.coli-K12.txt \| sed "s/cat[at]at/ <minus10box>&<\/minus10box> /g" \| sed -r "s/.{17} <minus10/<\/minus35box> &/g" \| sed "s/tt[gt]ac[at]<\/minus35box>/ <minus35box>&/g" \| sed "s/gagg/ <rbs>&<\/rbs> /g" \| sed "s/<\/rbs>/&\n/g" \| sed "2s/.../&/g" \| sed "2s/atg/ <start_codon>&<\/start_codon> /1" \| sed -r "s/.{26} <rbs/<\/tss> &/g" \| sed -r "s/.<\/tss/<tss> &/g" \| sed "2s/gcctttt..../ <terminator>&<\/terminator> /g" \| sed "2s/t[ag][ag]/ <stop_codon>&<\/stop_codon> /2" \| sed "s/t/u/g" \| sed -f genetic-code.sed		b) cat infA-E.coli-K12.txt \| sed "s/cat[at]at/ <minus10box>&<\/minus10box> /g" \| sed -r "s/.{17} <minus10/<\/minus35box> &/g" \| sed "s/tt[gt]ac[at]<\/minus35box>/ <minus35box>&/g" \| sed "s/gagg/ <rbs>&<\/rbs> /g" \| sed "s/<\/rbs>/&\n/g" \| sed "2s/.../&/g" \| sed "2s/atg/ <start_codon>&<\/start_codon> /1" \| sed -r "s/.{26} <rbs/<\/tss> &/g" \| sed -r "s/.<\/tss/<tss> &/g" \| sed "2s/gcctttt..../ <terminator>&<\/terminator> /g" \| sed "2s/t[ag][ag]/ <stop_codon>&<\/stop_codon> /2" \| sed "s/t/u/g" \| sed -f genetic-code.sed