Kevinmcgee Week 8 - Revision history

Kevinmcgee: Added homework

2013-10-17T20:03:07Z

Added homework

Kevinmcgee at 19:48, 17 October 2013

2013-10-17T19:48:27Z

Kevinmcgee: Added map

2013-10-17T19:34:29Z

Added map

Kevinmcgee at 19:32, 17 October 2013

2013-10-17T19:32:26Z

← Older revision		Revision as of 20:03, 17 October 2013
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	#It was a component of the acetyl coenzyme A carboxylase complex.		#It was a component of the acetyl coenzyme A carboxylase complex.
	#We had a difference of the UniProt ID's of 338 while his was 339 and I had 219 genes linked to go terms while his had 291. I had 5221 probes in data set. I had 5100 linked to Uniprot while he had 4449 and I had 2475 linked to GO terms while he had 1990.The z score is based on an N of 2475 and a R of 219 distinct genes in the GO.		#We had a difference of the UniProt ID's of 338 while his was 339 and I had 219 genes linked to go terms while his had 291. I had 5221 probes in data set. I had 5100 linked to Uniprot while he had 4449 and I had 2475 linked to GO terms while he had 1990.The z score is based on an N of 2475 and a R of 219 distinct genes in the GO.
		+	#Top twenty filtered terms:
		+	#*arginine metabolic process
		+	#*cellular amino acid biosynthetic process
		+	#*purine nucleotide metabolic process
		+	#*cellular amino acid metabolic process
		+	#*purine nucleotide biosynthetic process
		+	#*nucleotide metabolic process
		+	#*nucleotide biosynthetic process
		+	#*ribonucleoside monophosphate biosynthetic process
		+	#*arginine biosynthetic process
		+	#*amine metabolic process
		+	#*extracellular region
		+	#*histidine biosynthetic process
		+	#*purine ribonucleotide biosynthetic process
		+	#*carbon-nitrogen ligase activity, with glutamine as amido-N-donor
		+	#*flagellum organization
		+	#*transporter activity
		+	#*carboxylic acid metabolic process
		+	#*transport
		+	#*thiamin pyrophosphate binding
		+	#*organic acid metabolic process
		+	#*amino acid transport

@@ Line 60: / Line 60: @@
 #*VCA0583
 ##*Outer membrane-bounded periplasmic space
-#*'''Are they the same as your buddy? why or why not?'''
+#*The lists are different from one another. This could be because I am using a database from 2012 while my buddy is using one from 2008
 #I clicked on the go term "metal ion bonding". Under that, I looked at the gene Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, which turned out to be decreased.
 #It was a component of the acetyl coenzyme  A carboxylase complex.

← Older revision		Revision as of 19:34, 17 October 2013
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	*[[Media: Merrell_Compiled_Raw_Data_Vibrio_Dillon_Williams.gex]]		*[[Media: Merrell_Compiled_Raw_Data_Vibrio_Dillon_Williams.gex]]
		+
		+	*[[Media: Kevin_McGee.mapp \| Gene Map file for Metal Ion Bonding]]

@@ Line 61: / Line 61: @@
 ##*Outer membrane-bounded periplasmic space
 #*'''Are they the same as your buddy? why or why not?'''
+#I clicked on the go term "metal ion bonding". Under that, I looked at the gene Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, which turned out to be decreased.
 *[[Media: Merrell_Compiled_Raw_Data_Vibrio_KevinMcGee_10132013.txt|.txt spreadsheet]]