Laurmagee: Week 3 - Revision history

Laurmagee: Fixed Category

2013-09-17T16:28:45Z

Fixed Category

2013-09-17T16:27:58Z

Added Category

2013-09-13T06:38:44Z

YAY! I FIGURED IT OUT!!!!!!

2013-09-13T04:13:07Z

‎Where's Your Stuff?

2013-09-13T04:12:48Z

‎Where's Your Stuff?

2013-09-13T04:11:25Z

Added Where's Your Stuff

2013-09-13T04:06:47Z

‎XMLPipeDB Match Practice

2013-09-13T04:03:54Z

‎XMLPipeDB Match Practice

2013-09-13T03:39:43Z

‎XMLPipeDB Match Practice

2013-09-13T03:35:49Z

Finished Assignment!

← Older revision		Revision as of 16:28, 17 September 2013
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	[[User:Laurmagee\|Laurmagee]] ([[User talk:Laurmagee\|talk]]) 20:39, 12 September 2013 (PDT)		[[User:Laurmagee\|Laurmagee]] ([[User talk:Laurmagee\|talk]]) 20:39, 12 September 2013 (PDT)

−	[[Category: Journal ~~Assignment~~]]	+	[[Category: Journal Entry]]

← Older revision		Revision as of 16:27, 17 September 2013
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	[[User:Laurmagee\|Laurmagee]] ([[User talk:Laurmagee\|talk]]) 20:39, 12 September 2013 (PDT)		[[User:Laurmagee\|Laurmagee]] ([[User talk:Laurmagee\|talk]]) 20:39, 12 September 2013 (PDT)
		+
		+	[[Category: Journal Assignment]]

@@ Line 27: / Line 27: @@
 #*I think the pattern "\"James.*\"" stands for someone's name. The name could appear in a book, movie script, or any other piece of writing.
 #Use Match to count the occurrences of the pattern ATG in the hs_ref_GRCh37_chr19.fa file (this may take a while). Then, use grep and wc to do the same thing.
-#*MATCH gives the answer of
+#*MATCH gives the answer of 830101.
-#*grep/wc give the answer of
+#*grep/wc give the answer of 502410.
 #*I would suspect that these answers do make sense, because grep/wc only count the amount of lines that contain ATG, but MATCH will also take into account the number times ATG occurs in each line.
 [[User:Laurmagee|Laurmagee]] ([[User talk:Laurmagee|talk]]) 20:39, 12 September 2013 (PDT)

← Older revision		Revision as of 04:13, 13 September 2013
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−	~~==Where's Your Stuff?==~~
−	~~[http://file:///Users/laurenmagee/Desktop/Biological%20Databases.html]~~
−
	==Complement of a Strand==		==Complement of a Strand==
	* The appropriate processing commands are the following: cat sequence_file \| sed "y/atgc/tacg/"		* The appropriate processing commands are the following: cat sequence_file \| sed "y/atgc/tacg/"

@@ Line 1: / Line 1: @@
 ==Where's Your Stuff?==
-<file:///Users/laurenmagee/Desktop/Biological%20Databases.html>
+[http://file:///Users/laurenmagee/Desktop/Biological%20Databases.html]
 ==Complement of a Strand==

← Older revision		Revision as of 04:11, 13 September 2013
Line 1:		Line 1:
		+	==Where's Your Stuff?==
		+	<file:///Users/laurenmagee/Desktop/Biological%20Databases.html>
		+
	==Complement of a Strand==		==Complement of a Strand==
	* The appropriate processing commands are the following: cat sequence_file \| sed "y/atgc/tacg/"		* The appropriate processing commands are the following: cat sequence_file \| sed "y/atgc/tacg/"

← Older revision		Revision as of 03:39, 13 September 2013
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	#*grep/wc give the answer 502410		#*grep/wc give the answer 502410
	#*These answers do make sense, because grep/wc only count the amount of lines that contain ATG, but MATCH will also take into account the number times ATG occurs in each line.		#*These answers do make sense, because grep/wc only count the amount of lines that contain ATG, but MATCH will also take into account the number times ATG occurs in each line.
		+
		+	[[User:Laurmagee\|Laurmagee]] ([[User talk:Laurmagee\|talk]]) 20:39, 12 September 2013 (PDT)

@@ Line 21: / Line 21: @@
 #*The MATCH command finds two unique solutions.
 #*The pattern "go:0009165" appears twice and "go:0009168" appears once.
-#*
+#*The pattern "GO:000916" seems to be an ID. It probably relates to a much longer sequence, because it includes a large number of identification, 000916. I assume there are other points in the sequence that are identified with other identification numbers as well.
 #You must use the MATCH command java -jar xmlpipedb-match-1.1.1.jar "\"James.*\"" < 493.P_falciparum.xml to find the occurrences of the pattern in the file.
 #*The MATCH command finds two unique solutions.
 #*The pattern "james k.d." appears 8238 times and "james a.a." appears once.
-#*
+#*I think the pattern "\"James.*\"" stands for someone's name. The name could appear in a book, movie script, or any other piece of writing.
+#Use Match to count the occurrences of the pattern ATG in the hs_ref_GRCh37_chr19.fa file (this may take a while). Then, use grep and wc to do the same thing.
-#*
+#*MATCH gives the answer of 830101.
-#*
+#*grep/wc give the answer 502410
-#*
+#*These answers do make sense, because grep/wc only count the amount of lines that contain ATG, but MATCH will also take into account the number times ATG occurs in each line.