https://xmlpipedb.lmucs.io/biodb/fall2013/index.php?action=history&feed=atom&title=Mpetredi_Week_8Mpetredi Week 8 - Revision history2026-06-02T18:02:52ZRevision history for this page on the wikiMediaWiki 1.20.3https://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Mpetredi_Week_8&diff=3554&oldid=prevMpetredi: /* MAPPFinder Procedure */ added note about comparing results2013-10-18T05:38:43Z<p><span dir="auto"><span class="autocomment">MAPPFinder Procedure: </span> added note about comparing results</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>***nucleobase, nucleoside, nucleotide and nucleic acid catabolic process: The chemical reactions and pathways resulting in the breakdown of nucleobases, nucleosides, nucleotides and nucleic acids.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>***nucleobase, nucleoside, nucleotide and nucleic acid catabolic process: The chemical reactions and pathways resulting in the breakdown of nucleobases, nucleosides, nucleotides and nucleic acids.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>***unfolded protein binding: Interacting selectively and non-covalently with an unfolded protein.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>***unfolded protein binding: Interacting selectively and non-covalently with an unfolded protein.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">*I'd compare my results to Merrell's results if I could, but the embedded link within the paper no longer works, displaying a "Not Found" error.</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>   </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>   </div></td></tr>
</table>Mpetredihttps://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Mpetredi_Week_8&diff=3518&oldid=prevMpetredi: /* MAPPFinder Procedure */ added GO terms from filtering with definitions2013-10-18T04:32:40Z<p><span dir="auto"><span class="autocomment">MAPPFinder Procedure: </span> added GO terms from filtering with definitions</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#**percent Changed: greater than or equal to 25-50%</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#**percent Changed: greater than or equal to 25-50%</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Comparing the Excel results with the top 10 MAPPFinder results, the only matches shared between the two were hexose catabolic process, glucose catabolic process, glycolysis, monosaccharide catabolic process, alcohol catabolic process, and cellular carbohydrate catabolic process.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Comparing the Excel results with the top 10 MAPPFinder results, the only matches shared between the two were hexose catabolic process, glucose catabolic process, glycolysis, monosaccharide catabolic process, alcohol catabolic process, and cellular carbohydrate catabolic process.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">**Other Filtered GOs with definitions from geneontology.org</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">***organelle organization: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">***translation elongation factor activity: Functions in chain elongation during polypeptide synthesis at the ribosome.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">***translational elongation: The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">***chromosome organization: A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">***DNA packaging: Any process in which DNA and associated proteins are formed into a compact, orderly structure.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">***chromosome condensation: The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">***nucleotide catabolic process: The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">***protein targeting: The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">***nucleobase, nucleoside and nucleotide catabolic process: The chemical reactions and pathways resulting in the breakdown of nucleobases, nucleosides, nucleotides and nucleic acids.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">***nucleobase, nucleoside, nucleotide and nucleic acid catabolic process: The chemical reactions and pathways resulting in the breakdown of nucleobases, nucleosides, nucleotides and nucleic acids.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">***unfolded protein binding: Interacting selectively and non-covalently with an unfolded protein.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"> </ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Individual Assignment Categories}}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Individual Assignment Categories}}</div></td></tr>
</table>Mpetredihttps://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Mpetredi_Week_8&diff=3512&oldid=prevMpetredi: /* MAPPFinder Procedure */ simple comparison between MAPP and Criterion xls2013-10-18T04:10:14Z<p><span dir="auto"><span class="autocomment">MAPPFinder Procedure: </span> simple comparison between MAPP and Criterion xls</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#**Number Changed: greater than or equal to 4 or 5 AND less than 100 (I used 4)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#**Number Changed: greater than or equal to 4 or 5 AND less than 100 (I used 4)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#**percent Changed: greater than or equal to 25-50%</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#**percent Changed: greater than or equal to 25-50%</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*Comparing the Excel results with the top 10 MAPPFinder results, the only matches shared between the two were hexose catabolic process, glucose catabolic process, glycolysis, monosaccharide catabolic process, alcohol catabolic process, and cellular carbohydrate catabolic process.</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Individual Assignment Categories}}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Individual Assignment Categories}}</div></td></tr>
</table>Mpetredihttps://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Mpetredi_Week_8&diff=3467&oldid=prevMpetredi: added link to pt 2 of assignment2013-10-18T03:15:20Z<p>added link to pt 2 of assignment</p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==References==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==References==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Week 8]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Week 8]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>*[[http://www.openwetware.org/wiki/BIOL398-01/S10:Sample_Microarray_Analysis_Vibrio_cholerae OpenWetWare Instructions]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>*[[http://www.openwetware.org/wiki/BIOL398-01/S10:Sample_Microarray_Analysis_Vibrio_cholerae OpenWetWare Instructions <ins class="diffchange diffchange-inline">pt. 1]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">*[[http://www.openwetware.org/wiki/BIOL367/F10:GenMAPP_and_MAPPFinder_Protocols OpenWetWare Instructions pt. 2</ins>]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2776822/pdf/nihms-156662.pdf Merrel's publication]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2776822/pdf/nihms-156662.pdf Merrel's publication]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
</table>Mpetredihttps://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Mpetredi_Week_8&diff=3435&oldid=prevMpetredi: /* Relevant Documents */ forgot to add "media" in front of file names2013-10-17T22:11:59Z<p><span dir="auto"><span class="autocomment">Relevant Documents: </span> forgot to add "media" in front of file names</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.xls]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.xls]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.txt]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.txt]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>*[[Mpetredi_-_Merrell_Compiled_Raw_Data_Vibrio_2013-10-15.EX.txt]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>*[[<ins class="diffchange diffchange-inline">Media:</ins>Mpetredi_-_Merrell_Compiled_Raw_Data_Vibrio_2013-10-15.EX.txt]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>*[[Mpetredi_color_set_2013-10-15.gex]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>*[[<ins class="diffchange diffchange-inline">Media:</ins>Mpetredi_color_set_2013-10-15.gex]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>*[[Mpetredi_MAPP_20131017-Criterion1-GO.txt]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>*[[<ins class="diffchange diffchange-inline">Media:</ins>Mpetredi_MAPP_20131017-Criterion1-GO.txt]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>*[[Mpetredi_MAPP_20131017-Criterion1-GO.xls]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>*[[<ins class="diffchange diffchange-inline">Media:</ins>Mpetredi_MAPP_20131017-Criterion1-GO.xls]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:mpetredi 20131017 Catalytic_activity.mapp]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:mpetredi 20131017 Catalytic_activity.mapp]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>*[[Mpetredi_color_set_2013-10-15.gmf]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>*[[<ins class="diffchange diffchange-inline">Media:</ins>Mpetredi_color_set_2013-10-15.gmf]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==References==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==References==</div></td></tr>
</table>Mpetredihttps://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Mpetredi_Week_8&diff=3434&oldid=prevMpetredi: added all necessary files2013-10-17T22:11:14Z<p>added all necessary files</p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.xls]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.xls]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.txt]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.txt]]</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*[[Mpetredi_-_Merrell_Compiled_Raw_Data_Vibrio_2013-10-15.EX.txt]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*[[Mpetredi_color_set_2013-10-15.gex]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*[[Mpetredi_MAPP_20131017-Criterion1-GO.txt]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*[[Mpetredi_MAPP_20131017-Criterion1-GO.xls]]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:mpetredi 20131017 Catalytic_activity.mapp]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:mpetredi 20131017 Catalytic_activity.mapp]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>*</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>*<ins class="diffchange diffchange-inline">[[Mpetredi_color_set_2013-10-15.gmf]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==References==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==References==</div></td></tr>
</table>Mpetredihttps://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Mpetredi_Week_8&diff=3425&oldid=prevMpetredi: /* MAPPFinder Procedure */ nearly finished with lab journal2013-10-17T22:03:31Z<p><span dir="auto"><span class="autocomment">MAPPFinder Procedure: </span> nearly finished with lab journal</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#*This will open GenMAPP and give you a graphical interface of all genes associated with the GO term (catayltic function in my case) along with a color legend to indicate special genes (pink = increase, green = decrease). Click on any gene to find out more about it.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#*This will open GenMAPP and give you a graphical interface of all genes associated with the GO term (catayltic function in my case) along with a color legend to indicate special genes (pink = increase, green = decrease). Click on any gene to find out more about it.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#**I clicked on CDD_VIBCH (Uniprot ID: Q9KSK5). Its function is described in uniprot as follows: "this enzyme scavenge exogenous and endogenous cytidine and 2’-deoxycytidine for UMP synthesis" [[Image: mpetredi 20131017 GenMAPP_GO_results.PNG]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>#**I clicked on CDD_VIBCH (Uniprot ID: Q9KSK5). Its function is described in uniprot as follows: "this enzyme scavenge exogenous and endogenous cytidine and 2’-deoxycytidine for UMP synthesis" [[Image: mpetredi 20131017 GenMAPP_GO_results.PNG]]</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">#Open you CriterionX-GO.txt file created when you made the MAPP in Excel. This will display the information in tabular form as to how MAPPFinder calculated the results.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">#*Compared to Gabriel, my results were... while his results were...</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">#Perform an Autofilter with the row that starts with "GOID"</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">#*Apply these specific filters</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">#**Z Score: greater than 2</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">#**PermuteP: less than 0.05</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">#**Number Changed: greater than or equal to 4 or 5 AND less than 100 (I used 4)</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">#**percent Changed: greater than or equal to 25-50%</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Individual Assignment Categories}}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Individual Assignment Categories}}</div></td></tr>
</table>Mpetredihttps://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Mpetredi_Week_8&diff=3424&oldid=prevMpetredi: fixed excel file (again)2013-10-17T21:46:55Z<p>fixed excel file (again)</p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Relevant Documents==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Relevant Documents==</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.<del class="diffchange diffchange-inline">xlsx</del>]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.<ins class="diffchange diffchange-inline">xls</ins>]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.txt]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.txt]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:mpetredi 20131017 Catalytic_activity.mapp]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:mpetredi 20131017 Catalytic_activity.mapp]]</div></td></tr>
</table>Mpetredihttps://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Mpetredi_Week_8&diff=3423&oldid=prevMpetredi: /* Relevant Documents */ fixed excel link2013-10-17T21:45:14Z<p><span dir="auto"><span class="autocomment">Relevant Documents: </span> fixed excel link</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Relevant Documents==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Relevant Documents==</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.<del class="diffchange diffchange-inline">xl</del>]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.<ins class="diffchange diffchange-inline">xlsx</ins>]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.txt]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:Mpetredi - Merrell Compiled Raw Data Vibrio.txt]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:mpetredi 20131017 Catalytic_activity.mapp]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*[[Media:mpetredi 20131017 Catalytic_activity.mapp]]</div></td></tr>
</table>Mpetredi