Quality Assurance - Revision history

Lena: /* Guild Members */ added Lena to members

2013-11-14T18:18:25Z

‎Guild Members: added Lena to members

Kdahlquist: /* Milestones */ fixed capitalization for GeneID

2013-11-06T18:45:39Z

‎Milestones: fixed capitalization for GeneID

Slouie: Edited guild members

2013-11-05T18:46:17Z

Edited guild members

Kdahlquist: category group projects

2013-10-18T19:16:44Z

category group projects

Dondi: Initial transcription of this page.

2013-07-02T18:15:31Z

Initial transcription of this page.

New page

* [[Gene Database Project]]
* [[Gene Database Project Report Guidelines]]

== Guild Members ==

* ''To be determined.''

== Milestones ==

=== Milestone 1 ===

# (with Coders) Get a full import-export cycle done.
# (with Coders) Decide on a file/version management scheme/system.
# Learn the ID systems:
#* Systems that are the same for each species (hint: guild members help each other out by posting the relevant information on this page)
#** UniProt
#** RefSeq
#** GeneId (EntrezGene from NCBI)
#** GO
#* The OrderedLocusNames for your species

=== Milestone 2 ===

# Characterize regular expression patterns to detect the IDs.
#* XMLPipeDB Match utility
#* Direct SQL queries in PostgreSQL
#* For example, the ''Vibrio'' IDs were of the form VC#### or VC_####, how would you express that in Match or as an SQL query?
#* Table inspection/filtering/sorting in Microsoft Access
#* If needed, side-by-side sorted comparisons in Microsoft Excel
# Document/log all work done, problems encountered, and how they were resolved.

=== Milestone 3 ===

Along with your Coder, customize the tally engine setup for your species as specified in [[Coder#Customize_the_IDs_that_the_Tally_Engine_Counts|these coder steps]]. You will want to add, at the very least, the ''ordered locus'' IDs for your species.

=== Milestone 4 ===

# Document the relational database schema for the gene database.
# Create the ReadMe with comparisons to MOD for your species

← Older revision		Revision as of 18:18, 14 November 2013
Line 5:		Line 5:

	* [[User:Slouie \| Stephen Louie]]		* [[User:Slouie \| Stephen Louie]]
		+	*[[User:Lena\| Lena Hunt]]

	== Milestones ==		== Milestones ==

← Older revision		Revision as of 19:16, 18 October 2013
Line 38:		Line 38:
	# Document the relational database schema for the gene database.		# Document the relational database schema for the gene database.
	# Create the ReadMe with comparisons to MOD for your species		# Create the ReadMe with comparisons to MOD for your species
		+
		+	[[Category:Group Projects]]

@@ Line 16: / Line 16: @@
 #** UniProt
 #** RefSeq
-#** GeneId (EntrezGene from NCBI)
+#** GeneID (EntrezGene from NCBI)
 #** GO
 #* The OrderedLocusNames for your species

@@ Line 4: / Line 4: @@
 == Guild Members ==
-* ''To be determined.''
+* [[User:Slouie | Stephen Louie]]
 == Milestones ==