← Older revision

Revision as of 17:42, 16 June 2015

Line 40:

# The current and previous UniProt-GOA files can be downloaded from the [http://ftp.ebi.ac.uk/pub/databases/GO/goa/ UniProt-GOA ftp site].

# In the directory that appears, click the link to the [http://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/ “proteomes” directory].

−

# Find your organism of interest and right-click on the link to download the GO annotations and select “Save target as” or “Save link as” and save the GOA file. For example, [~~ftp~~://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/46.V_cholerae_ATCC_39315.goa this is the link] for ''Vibrio cholerae''.

+

# Find your organism of interest and right-click on the link to download the GO annotations and select “Save target as” or “Save link as” and save the GOA file. For example, [http://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/46.V_cholerae_ATCC_39315.goa this is the link] for ''Vibrio cholerae''.

#* '''Note:''' Since the GOA file is a text file, your browser will not automatically download it when you left-click on the link. Instead, it will try to open the file in your browser window. Because it is a large file, this could take a long time if your internet connection is slow.

#* The version information can be found on displayed in the ftp file directory under the “Last modified” column. You should record the version information for “GOA Proteome Sets” and the date they were released as this is your original data source.

Running GenMAPP Builder - Revision history

Kdahlquist: /* GOA */ fixed vibrio link

@@ Line 40: / Line 40: @@
 # The current and previous UniProt-GOA files can be downloaded from the [http://ftp.ebi.ac.uk/pub/databases/GO/goa/ UniProt-GOA ftp site].
 # In the directory that appears, click the link to the [http://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/ “proteomes” directory].
-# Find your organism of interest and right-click on the link to download the GO annotations and select “Save target as” or “Save link as” and save the GOA file.  For example, [ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/46.V_cholerae_ATCC_39315.goa this is the link] for ''Vibrio cholerae''.
+# Find your organism of interest and right-click on the link to download the GO annotations and select “Save target as” or “Save link as” and save the GOA file.  For example, [http://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/46.V_cholerae_ATCC_39315.goa this is the link] for ''Vibrio cholerae''.
 #* '''Note:''' Since the GOA file is a text file, your browser will not automatically download it when you left-click on the link.  Instead, it will try to open the file in your browser window.  Because it is a large file, this could take a long time if your internet connection is slow.
 #* The version information can be found on displayed in the ftp file directory under the “Last modified” column.  You should record the version information for “GOA Proteome Sets” and the date they were released as this is your original data source.