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		<id>https://xmlpipedb.lmucs.io/biodb/fall2013/index.php?action=history&amp;feed=atom&amp;title=Stephen_Louie_Week_3</id>
		<title>Stephen Louie Week 3 - Revision history</title>
		<link rel="self" type="application/atom+xml" href="https://xmlpipedb.lmucs.io/biodb/fall2013/index.php?action=history&amp;feed=atom&amp;title=Stephen_Louie_Week_3"/>
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		<updated>2026-04-29T21:30:40Z</updated>
		<subtitle>Revision history for this page on the wiki</subtitle>
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	<entry>
		<id>https://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Stephen_Louie_Week_3&amp;diff=1918&amp;oldid=prev</id>
		<title>Slouie: Added corrections to #3 of XMLPipeDB practice</title>
		<link rel="alternate" type="text/html" href="https://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Stephen_Louie_Week_3&amp;diff=1918&amp;oldid=prev"/>
				<updated>2013-09-20T04:50:11Z</updated>
		
		<summary type="html">&lt;p&gt;Added corrections to #3 of XMLPipeDB practice&lt;/p&gt;
&lt;table class=&#039;diff diff-contentalign-left&#039;&gt;
				&lt;col class=&#039;diff-marker&#039; /&gt;
				&lt;col class=&#039;diff-content&#039; /&gt;
				&lt;col class=&#039;diff-marker&#039; /&gt;
				&lt;col class=&#039;diff-content&#039; /&gt;
			&lt;tr style=&#039;vertical-align: top;&#039;&gt;
			&lt;td colspan=&#039;2&#039; style=&quot;background-color: white; color:black;&quot;&gt;← Older revision&lt;/td&gt;
			&lt;td colspan=&#039;2&#039; style=&quot;background-color: white; color:black;&quot;&gt;Revision as of 04:50, 20 September 2013&lt;/td&gt;
			&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 31:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 31:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;#There are two unique matches.&amp;#160; GO:0009165 appears 2 times.&amp;#160; GO:0009168 appears 1 time.&amp;#160; I believe GO:000916 is a specific strain of bacterium&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;#There are two unique matches.&amp;#160; GO:0009165 appears 2 times.&amp;#160; GO:0009168 appears 1 time.&amp;#160; I believe GO:000916 is a specific strain of bacterium&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;#There are two unique matches.&amp;#160; &amp;quot;James K.D.&amp;quot; appears 8238 times.&amp;#160; &amp;quot;James A.A.&amp;quot; appears once.&amp;#160; \&amp;quot;James.*\ probably represents the name of an author.&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;#There are two unique matches.&amp;#160; &amp;quot;James K.D.&amp;quot; appears 8238 times.&amp;#160; &amp;quot;James A.A.&amp;quot; appears once.&amp;#160; \&amp;quot;James.*\ probably represents the name of an author.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;−&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;#Match gave 165 occurrences. grep/wc gave 162 occurrences.&amp;#160; Theses answers make sense due to the unique ways in which Match and grep/wc count for their occurrences.&amp;#160; Match reads the entire file as a single line while grep/wc breaks and scans the file in chunks.&amp;#160; The reasons grep/wc has less occurrences is because when the file is split up into chunks it can split a certain match in two pieces resulting in a lost match.&amp;#160; Since Match looks at the file in a single line, none of the matches are at risk of being split apart.&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;#Match gave 165 occurrences. grep/wc gave 162 occurrences.&amp;#160; Theses answers make sense due to the unique ways in which Match and grep/wc count for their occurrences.&amp;#160; Match reads the entire file as a single line while grep/wc breaks and scans the file in chunks.&amp;#160; The reasons grep/wc has less occurrences is because when the file is split up into chunks it can split a certain match in two pieces resulting in a lost match.&amp;#160; Since Match looks at the file in a single line, none of the matches are at risk of being split apart. &lt;ins class=&quot;diffchange diffchange-inline&quot;&gt; &amp;#039;&amp;#039;&amp;#039;Match found 830,101 occurrences. grep/wc gave 502,410 occurrences.&amp;#160; Match reads the entire file as a single line while grep/wc breaks and scans the file in chunks.&amp;#160; The reasons grep/wc has less occurrences is because when the file is split up into chunks it can split a certain match in two pieces resulting in a lost match.&amp;#160; Since Match looks at the file in a single line, none of the matches are at risk of being split apart.&amp;#039;&amp;#039;&amp;#039;&amp;#160; &lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;[[User:Slouie|Slouie]] ([[User talk:Slouie|talk]]) 11:18, 17 September 2013 (PDT)&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;[[User:Slouie|Slouie]] ([[User talk:Slouie|talk]]) 11:18, 17 September 2013 (PDT)&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;[[Category:Journal Entry]]&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;[[Category:Journal Entry]]&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Slouie</name></author>	</entry>

	<entry>
		<id>https://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Stephen_Louie_Week_3&amp;diff=1866&amp;oldid=prev</id>
		<title>Slouie: Edited Corrections</title>
		<link rel="alternate" type="text/html" href="https://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Stephen_Louie_Week_3&amp;diff=1866&amp;oldid=prev"/>
				<updated>2013-09-20T03:07:41Z</updated>
		
		<summary type="html">&lt;p&gt;Edited Corrections&lt;/p&gt;
&lt;table class=&#039;diff diff-contentalign-left&#039;&gt;
				&lt;col class=&#039;diff-marker&#039; /&gt;
				&lt;col class=&#039;diff-content&#039; /&gt;
				&lt;col class=&#039;diff-marker&#039; /&gt;
				&lt;col class=&#039;diff-content&#039; /&gt;
			&lt;tr style=&#039;vertical-align: top;&#039;&gt;
			&lt;td colspan=&#039;2&#039; style=&quot;background-color: white; color:black;&quot;&gt;← Older revision&lt;/td&gt;
			&lt;td colspan=&#039;2&#039; style=&quot;background-color: white; color:black;&quot;&gt;Revision as of 03:07, 20 September 2013&lt;/td&gt;
			&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 19:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 19:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;#160; cat prokaryote.txt | rev | sed &amp;quot;s/^..//g&amp;quot; | sed &amp;quot;s/.../&amp;amp; /g&amp;quot; | sed &amp;quot;s/t/u/g&amp;quot; | sed -f genetic-code.sed&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;#160; cat prokaryote.txt | rev | sed &amp;quot;s/^..//g&amp;quot; | sed &amp;quot;s/.../&amp;amp; /g&amp;quot; | sed &amp;quot;s/t/u/g&amp;quot; | sed -f genetic-code.sed&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;#039;&amp;#039;&amp;#039;Corrections:&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;#039;&amp;#039;&amp;#039;cat prokaryote.txt | sed &amp;quot;y/atcg/tagc/&amp;quot; | rev | sed &amp;quot;s/.../&amp;amp; /g&amp;quot; | sed &amp;quot;s/t/u/g&amp;quot; | sed -f genetic-code.sed&amp;#039;&amp;#039;&amp;#039;&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;#039;&amp;#039;&amp;#039;cat prokaryote.txt | sed &amp;quot;y/atcg/tagc/&amp;quot; | rev | sed &amp;quot;s/^.//g&amp;quot; | sed &amp;quot;s/.../&amp;amp; /g&amp;quot; | sed &amp;quot;s/t/u/g&amp;quot; | sed -f genetic-code.sed&amp;#039;&amp;#039;&amp;#039;&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;#039;&amp;#039;&amp;#039;cat prokaryote.txt | sed &amp;quot;y/atcg/tagc/&amp;quot; | rev | sed &amp;quot;s/^..//g&amp;quot; | sed &amp;quot;s/.../&amp;amp; /g&amp;quot; | sed &amp;quot;s/t/u/g&amp;quot; | sed -f genetic-code.sed&amp;#039;&amp;#039;&amp;#039;&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;#160;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;#039;&amp;#039;&amp;#039;&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;==XMLPipeDB Match Practice==&lt;/div&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;==XMLPipeDB Match Practice==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class=&#039;diff-marker&#039;&gt;&amp;#160;&lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Slouie</name></author>	</entry>

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#0 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(480): _DiffEngine-&gt;_diag()<br />
#1 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(291): _DiffEngine-&gt;_compareseq()<br />
#2 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(175): _DiffEngine-&gt;diff_local()<br />
#3 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(653): _DiffEngine-&gt;diff()<br />
#4 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(763): Diff-&gt;__construct()<br />
#5 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(655): DifferenceEngine-&gt;generateDiffBody()<br />
#6 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(593): DifferenceEngine-&gt;getDiffBody()<br />
#7 /apps/xmlpipedb/biodb/fall2013/includes/FeedUtils.php(147): DifferenceEngine-&gt;getDiff()<br />
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#10 /apps/xmlpipedb/biodb/fall2013/includes/actions/HistoryAction.php(121): HistoryAction-&gt;feed()<br />
#11 /apps/xmlpipedb/biodb/fall2013/includes/Action.php(541): HistoryAction-&gt;onView()<br />
#12 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(427): FormlessAction-&gt;show()<br />
#13 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(304): MediaWiki-&gt;performAction()<br />
#14 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(536): MediaWiki-&gt;performRequest()<br />
#15 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(446): MediaWiki-&gt;main()<br />
#16 /apps/xmlpipedb/biodb/fall2013/index.php(59): MediaWiki-&gt;run()<br />
#17 {main}<br />

