Taur.vil Week 12 - Revision history

Taur.vil: /* work with QA */

2013-11-19T18:32:15Z

‎work with QA

Taur.vil: /* Week 12 Reflection */

2013-11-15T05:05:41Z

‎Week 12 Reflection

Taur.vil: week 12 reflection

2013-11-15T04:40:50Z

week 12 reflection

Taur.vil: /* work with QA */

2013-11-14T18:48:29Z

‎work with QA

Taur.vil: /* Adding species profile to GenMAPP builder code database */

2013-11-14T18:45:18Z

‎Adding species profile to GenMAPP builder code database

Taur.vil: /* Lab Journal */

2013-11-14T18:37:15Z

‎Lab Journal

Taur.vil: /* Lab Journal */ R6 strain as well

2013-11-14T07:51:45Z

‎Lab Journal: R6 strain as well

Taur.vil: /* G54 */ finished through export

2013-11-14T06:37:09Z

‎G54: finished through export

Taur.vil: G54 initial gmBuilder run

2013-11-14T04:55:26Z

G54 initial gmBuilder run

New page

[[Week_12| Week 12]] Individual Journal

==Lab Journal==
===G54===
*Downloaded GM Builder 2.0b71 for my personal computer from [http://sourceforge.net/projects/xmlpipedb/files/GenMAPP%20Builder/]
*On my personal computer created new database in PgAdminIII titled: tATK_G54_20131113
*Ran SQL, opened gmbuilder.sql and executed
**Produced the expect 159 tables
*Configured gmbuilder-32bit.bat to connect with the database
*Imported the XML file 20131107_UniProtXML_tATK_G54_AJV.xml which can be found on our [[Streptococcus pneumoniae|team page]].

{{Taur.vil}}

[[Category: Journal Entry]]
[[Category: Individual Homework]]
[[Category: Team ATK]]
[[Category: Streptococcus pneumoniae]]

← Older revision		Revision as of 18:32, 19 November 2013
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		+	==Template==
		+	{{Team ATK}}

	[[Category: Journal Entry]]		[[Category: Journal Entry]]

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 #This week, we saw that we worked well had as a group, could divide labor well, and that everybody was competent enough to make progress working independently and with group members.
 #The largest weakness we have is scheduling. It's often hard for us to meet, so we'll have to plan our outside of class meetings well ahead of time. We also have an issue of direction, I observed that without a firm idea of purpose and an immediate goal, none of us work that efficiently necessitating firm direction and clear intermediate goals.
 ==Lab Journal==

← Older revision		Revision as of 04:40, 15 November 2013
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−	[[Week_12\| Week 12]] Individual Journal	+	[[Week_12\| Week 12]] Individual Journal for work on [[Streptococcus pneumoniae]]
		+
		+	==Week 12 Reflection==
		+	#The key accomplishments this week were: 1) doing a first export for each of our three data sets, 2) learning how to edit gmbuilder, and 3) Kevin starting to work with the experimental data and understand how it's put together.
		+	#Next week, we hope to 1) test whether the first export was successful, work to resolve errors, and try to run an export for all 3 sub-strains at once and 2) for Kevin to actually understand what is going on with the raw research data and why it is organized so weirdly.
		+	#This week, we saw that we worked well had as a group, could divide labor well, and that everybody was competent enough to make progress working independently and with group members.
		+	#The largest weakness we have is scheduling. It's often hard for us to meet, so we'll have to plan our outside of class meetings well ahead of time. We also have an issue of direction, I observed that without a firm idea of purpose and an immediate goal, none of us work that efficiently necessitating firm direction and clear intermediate goals.

	==Lab Journal==		==Lab Journal==

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 ======work with QA======
 *Need to work out what the placeholder for gene IDs are in the mod
 {{Taur.vil}}

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 *Edited code within profile to define a constructor for the species profile page
 *Insert override into code (see bellow for edits needed)
-*In source, organize imports*
+*Did a team synchronize to include the work from everyone else in the lab
 ======work with QA======

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 **Took less than an hour
 *Uploaded export to wiki: [[Media:20131113 R6export tATK TPV.gdb]]
 {{Taur.vil}}

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 **Extracted files using 7zip and imported extracted file into gmbuilder
 **Took 12.64 minutes to import and 10.63 minutes to process
-*Exported file to title: 20131113 G45export tATK TPV.gdb
+*Exported file to title: 20131113_G45export_tATK_TPV.gdb
 **Took less than 2h
 *Uploaded export to wiki: [[Media:20131113 G45export tATK TPV.gdb]]
+===R6===
+*Created new database in pgAdminIII titled: tATK_R6_20131113
 {{Taur.vil}}

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 *Configured gmbuilder-32bit.bat to connect with the database
 *Imported the XML file 20131107_UniProtXML_tATK_G54_AJV.xml which can be found on our [[Streptococcus pneumoniae|team page]].
+**Took 2.98 minutes