User talk:Dwilliams - Revision history

Dondi: Add week 9 feedback.

2013-11-30T00:44:18Z

Add week 9 feedback.

Kdahlquist: completed week 8 feedback

2013-10-14T23:14:38Z

completed week 8 feedback

Dondi: /* Week 6 Feedback */ new section

2013-10-12T19:35:27Z

‎Week 6 Feedback: new section

Kdahlquist: /* Week 2 Feedback */ follow-up

2013-10-11T22:01:12Z

‎Week 2 Feedback: follow-up

Kdahlquist: /* = Week 5 Database Wiki */ fixed formatting

2013-10-11T21:01:41Z

‎= Week 5 Database Wiki: fixed formatting

Kdahlquist: /* Week 5 Feedback */ noted that week 5 database wiki is missing

2013-10-11T21:01:29Z

‎Week 5 Feedback: noted that week 5 database wiki is missing

Kdahlquist: /* Week 5 Feedback */ completed week 5 feedback

2013-10-08T22:43:42Z

‎Week 5 Feedback: completed week 5 feedback

Kdahlquist: started section for week 5 feedback

2013-10-08T22:37:39Z

started section for week 5 feedback

Dondi: /* Week 4 Feedback */ new section

2013-09-25T06:35:23Z

‎Week 4 Feedback: new section

Dondi: /* Week 3 Feedback */ new section

2013-09-15T05:50:45Z

‎Week 3 Feedback: new section

← Older revision		Revision as of 00:44, 30 November 2013
Line 1:		Line 1:
		+	== Week 9 Feedback ==
		+
		+	Your week 9 work has (finally) been reviewed:
		+	* Three out of the four file versions, as specified by the testing report template, are not listed.
		+	* You logged all of the needed import/processing/export times.
		+	* You noted that there were problems with your .gdb file to the wiki, but by all accounts this was most likely a transient problem, and there is no indication that you went back and tried to upload the file again.
		+	* You successfully ran the Tally Engine.
		+	* You appear to have successfully run xmlpipedb-match, but reported only the results without posting primary documentation of this activity (e.g., screenshots, exact numeric output).
		+	* There is no indication that you successfully ran the appropriate PostgreSQL query.
		+	* You successfully examined your .gdb file in Microsoft Access, but did not compare the data against the benchmark version of the ''V. cholerae'' gene database.
		+	* You do not note differences and similarities in the ID tallies from your various counts, particularly the large ''OrderedLocusNames'' discrepancy between your .gdb file and the benchmark version.
		+	* There is no indication of the ID pattern(s) used for your ID searches/tallies.
		+	* Your lab notebook effectively documents your activities and results for this assignment.
		+
		+	Finally, your work was submitted on time and all specified wiki links and navigational aids were correctly included, except for the link from your journal entry page back to your user page and inclusion of the ''Journal Entry'' category.
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 16:44, 29 November 2013 (PST)
		+
	== Week 8 Interim Feedback ==		== Week 8 Interim Feedback ==

← Older revision		Revision as of 23:14, 14 October 2013
Line 1:		Line 1:
		+	== Week 8 Interim Feedback ==
		+
		+	* It was difficult for me to find your Week 8 files for review. While you uploaded them to the wiki, you did not link to them from any pages.
		+	* Once I did find them and download I saw that you need to add a date to the filename to follow the file naming convention requested in the assignment. For example, my filename could be named "Merrell_Compiled_Raw_Data_Vibrio_KD_20091020.xls".
		+	* Otherwise, the calculations you performed are correct and you are ready to go for Tuesday's exercise.
		+
		+	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 16:14, 14 October 2013 (PDT)''
		+
	== Week 1 Feedback ==		== Week 1 Feedback ==

← Older revision		Revision as of 19:35, 12 October 2013
Line 115:		Line 115:

	* This assignment is incomplete; I did not find a wiki page for GeneDB, am I missing something? ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 14:01, 11 October 2013 (PDT)''		* This assignment is incomplete; I did not find a wiki page for GeneDB, am I missing something? ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 14:01, 11 October 2013 (PDT)''
		+
		+	== Week 6 Feedback ==
		+
		+	Thank you for submitting everything on time!
		+	* The 8th query and the last, individual query joins the ''member'' table, but that table is not actually necessary. When working with databases, we are sensitive to doing more work than necessary, because sometimes this additional work strongly detracts from speed, particularly if the tables contain large numbers of rows. An extra but unnecessary join will also, in some cases, change the results that you get back.
		+	* In the last query as well, the plain English statement seeks only ratings of 3, but the SQL does not reflect this criterion.
		+	* All your other database queries were correct and properly documented.
		+	Regarding your navigation/wiki links, these items were missing or not to-spec:
		+	* Missing link from user page to shared journal page
		+	* Missing link from user page to [[Week 6]] assignment page
		+	* Missing “Journal Entry” category on your journal page
		+	These requested links and features make the navigation of your wiki work as easy as possible, so please make a habit of this.
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 12:35, 12 October 2013 (PDT)

← Older revision		Revision as of 22:01, 11 October 2013
Line 59:		Line 59:

	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 15:21, 11 September 2013 (PDT)''		''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 15:21, 11 September 2013 (PDT)''
		+
		+	=== Week 2 Follow-up ===
		+
		+	* I have reviewed the Week 2 assignment again and saw that you did not make any further changes to this page.
		+
		+	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 15:01, 11 October 2013 (PDT)''

	== Week 3 Feedback ==		== Week 3 Feedback ==

@@ Line 106: / Line 106: @@
 ''&mdash; [[User:Kdahlquist|Kdahlquist]] ([[User talk:Kdahlquist|talk]]) 15:43, 8 October 2013 (PDT)''
-==== Week 5 Database Wiki ===
+=== Week 5 Database Wiki ===
 * This assignment is incomplete; I did not find a wiki page for GeneDB, am I missing something?  ''&mdash; [[User:Kdahlquist|Kdahlquist]] ([[User talk:Kdahlquist|talk]]) 14:01, 11 October 2013 (PDT)''

← Older revision		Revision as of 21:01, 11 October 2013
Line 105:		Line 105:

	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 15:43, 8 October 2013 (PDT)''		''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 15:43, 8 October 2013 (PDT)''
		+
		+	==== Week 5 Database Wiki ===
		+
		+	* This assignment is incomplete; I did not find a wiki page for GeneDB, am I missing something? ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 14:01, 11 October 2013 (PDT)''

← Older revision		Revision as of 22:43, 8 October 2013
Line 97:		Line 97:

	== Week 5 Feedback ==		== Week 5 Feedback ==
		+
		+	This is feedback on the Week 5 individual assignment (UniProt Exercise) and shared class reflection. Feedback on your Database wiki page will come later.
		+
		+	* I did not see an entry in the [[Class_Journal_Week_5 \| Week 5 shared class reflection.]]
		+	* On your individual Week 5 page, I did not see any evidence that you kept an electronic lab notebook recording your work on the UniProt exercise. Starting again with the [[Week 8]] assignment and for the rest of the semester, this will be an important component of your weekly assignment. Please let me know if you are unclear as to what this entails.
		+	* You are also missing the link from your user page to the assignment page and the category on your journal entry. Looking at the feedback from past assignments, you seem to be consistently missing these. At this point in the semester using your template for these links should be routine. Again, please let me or Dr. Dionisio know if you need assistance with how to do this.
		+
		+	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 15:43, 8 October 2013 (PDT)''

← Older revision		Revision as of 22:37, 8 October 2013
Line 95:		Line 95:

	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 23:35, 24 September 2013 (PDT)		—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 23:35, 24 September 2013 (PDT)
		+
		+	== Week 5 Feedback ==

← Older revision		Revision as of 06:35, 25 September 2013
Line 73:		Line 73:

	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:50, 14 September 2013 (PDT)		—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:50, 14 September 2013 (PDT)
		+
		+	== Week 4 Feedback ==
		+
		+	Thank you for submitting your work on time! Here’s how your “automated annotation” work turned out, item by item. Items that had issues are italicized:
		+	* -35 box was correctly identified with an appropriate command.
		+	* -10 box was correctly identified with an appropriate command.
		+	* ''The transcription start site was off by one base.''
		+	* Ribosome binding site was correctly identified with an appropriate command.
		+	* Start codon was correctly identified with an appropriate command.
		+	* Stop codon was correctly identified with an appropriate command.
		+	* ''You missed that the terminator includes 4 additional base pairs after the hairpin.''
		+	* ''The mRNA strand is short—only the start-to-stop codon was identified, but transcription actually goes from the transcription start site to the end of the terminator.''
		+	* You determined the correct amino acid sequence with an appropriate command.
		+	In terms of your wiki link routine, your pages were missing the following:
		+	* Link from user page to shared journal page.
		+	* Correct page name for individual assignment page. (i.e., the name of the page was incorrect)
		+	* Link from user page to [[Week 4]] assignment page.
		+	* Link from individual assignment page to user page.
		+
		+	Let me know if you have any questions.
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 23:35, 24 September 2013 (PDT)

← Older revision		Revision as of 05:50, 15 September 2013
Line 59:		Line 59:

	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 15:21, 11 September 2013 (PDT)''		''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 15:21, 11 September 2013 (PDT)''
		+
		+	== Week 3 Feedback ==
		+
		+	* Thank you for submitting your assignment on time!
		+	* Your experience with “Where’s my stuff” typically occurs when a computing system is strongly protecting file extensions like ''.txt'' and ''.html''. Different operating systems apply protections differently. Typically, there is a setting one can hit that tells the computer that you know what you are doing with respect to these extensions, after which you will then have greater control over these. In any case, nothing to worry about; what matters is that you got a sense for what role these file extensions play.
		+	* Your '''sed''' and '''match''' skills are great! All of your commands were correct.
		+	* You were missing a number of requested links and wiki elements:
		+	** Your user page was missing a link to the shared journal page
		+	** Your user page was also missing a link to the [[Week 3]] assignment page
		+	** Your journal answer page was missing a link back to your user page
		+	** Your journal answer page was also missing the requested ''Journal Entry'' category
		+	:Please note the bulleted checklist provided under the assignment headings so that you don’t miss these in future assignments. A template will help, so that you will only need to edit these links in one place. Let me know if you need additional help with getting a template to work as needed.
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:50, 14 September 2013 (PDT)