User talk:Kevinmcgee - Revision history

Dondi: Add week 9 feedback.

2013-11-30T00:16:15Z

Add week 9 feedback.

Kdahlquist: /* Week 8 Interim Feedback */ note to make corrections

2013-10-14T23:07:31Z

‎Week 8 Interim Feedback: note to make corrections

Kdahlquist: completed week 8 interim feedback

2013-10-14T23:06:46Z

completed week 8 interim feedback

Dondi: /* Week 6 Feedback */ new section

2013-10-12T19:08:48Z

‎Week 6 Feedback: new section

Kdahlquist: /* Week 2 Feedback */ follow-up

2013-10-11T22:04:43Z

‎Week 2 Feedback: follow-up

Kdahlquist: /* Week 5 Feedback */ completed feedback

2013-10-11T21:15:39Z

‎Week 5 Feedback: completed feedback

Kdahlquist: completed week 5 feedback

2013-10-08T23:04:10Z

completed week 5 feedback

Dondi: /* Week 4 Feedback */ new section

2013-09-25T05:50:12Z

‎Week 4 Feedback: new section

Dondi: /* Week 3 Feedback */ new section

2013-09-15T05:21:09Z

‎Week 3 Feedback: new section

Kdahlquist: note that I answered question on my user talk page

2013-09-12T16:15:12Z

note that I answered question on my user talk page

← Older revision		Revision as of 00:16, 30 November 2013
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		+	== Week 9 Feedback ==
		+
		+	Your week 9 work has (finally) been reviewed:
		+	* Three out of the four file versions, as specified by the testing report template, are not listed.
		+	* You logged all of the needed import/processing/export times.
		+	* You successfully uploaded your .gdb file to the wiki.
		+	* You successfully ran the Tally Engine.
		+	* You successfully ran xmlpipedb-match.
		+	* You successfully ran the appropriate PostgreSQL query.
		+	* You successfully examined your .gdb file in Microsoft Access but did not compare the data against the benchmark version of the ''V. cholerae'' gene database.
		+	* You correctly noted differences and similarities in the ID tallies from your various counts.
		+	* You clearly indicated the ID pattern used for your ID searches/tallies.
		+	* Your lab notebook effectively documents your activities and results for this assignment.
		+
		+	Finally, your work was submitted on time and all specified wiki links and navigational aids were correctly included. Well done!
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 16:16, 29 November 2013 (PST)
		+
	== Week 8 Interim Feedback ==		== Week 8 Interim Feedback ==

@@ Line 5: / Line 5: @@
 ** When scaling and centering the log fold changes based on those values, you forgot the second dollar sign in the formula.
 ** The rest of your calculations are correct, but based on erroneous numbers from the previous sheet.
 * The syntax for linking to the files for download on your Week 8 journal page is incorrect. Instead of <nowiki>[[File:filename]] use [[Media:filename]].</nowiki>

← Older revision		Revision as of 23:06, 14 October 2013
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		+	== Week 8 Interim Feedback ==
		+
		+	* I have reviewed your spreadsheet from part 1 of the Week 8 assignment. Your made some errors on the "scaled_centered" sheet that have propagated through to the other sheets.
		+	** When you calculated the AVERAGE and STDEV for each column, you used a comma instead of a colon to specify the cell range. The way you wrote it, it simply averages or computes the standard deviation of just those two values.
		+	** When scaling and centering the log fold changes based on those values, you forgot the second dollar sign in the formula.
		+	** The rest of your calculations are correct, but based on erroneous numbers from the previous sheet.
		+	* The syntax for linking to the files for download on your Week 8 journal page is incorrect. Instead of <nowiki>[[File:filename]] use [[Media:filename]].</nowiki>
		+
		+	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 16:06, 14 October 2013 (PDT)''
		+
	== Week 1 Feedback ==		== Week 1 Feedback ==

← Older revision		Revision as of 19:08, 12 October 2013
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	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 14:15, 11 October 2013 (PDT)		''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 14:15, 11 October 2013 (PDT)
		+
		+	== Week 6 Feedback ==
		+
		+	Thank you for submitting everything on time!
		+	* The wiki markup for movies-with-apostrophe query does not reproduce the query correctly because the wiki interprets repeated apostrophes as starting either bold or italic text; to render the apostrophes accurately, you need the '''nowiki''' tag (like this: <nowiki>''''</nowiki> [view the wiki source to see how it’s done]). Still, no answer was provided; note the instructions stated that you should provide a subset of the answers in the event that the total result was too long.
		+	* The 5th query, which requests counts by year, is much easier to answer if you include ''year'' in the ''select'' clause. What you have still produces the right answer, but you have to be careful in determining which count pertains to which year. In particular, what if there was a year with zero movies? That might be missed in the tallies.
		+	* In the 9th query, which requests the average rating for movies beginning with “Star,” you computed the average ''year'' and not the ''rating''.
		+	* All your other database queries were correct and properly documented.
		+	Regarding your navigation/wiki links, a couple of items were missing:
		+	* Link from the journal page back to your user page
		+	* “Journal Entry” category on your journal page
		+	These requested links and features make the navigation of your wiki work as easy as possible.
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 12:08, 12 October 2013 (PDT)

← Older revision		Revision as of 22:04, 11 October 2013
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	P.S. I answered your question on my user talk page. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 09:15, 12 September 2013 (PDT)''		P.S. I answered your question on my user talk page. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 09:15, 12 September 2013 (PDT)''
		+
		+	=== Week 2 Follow-up ===
		+
		+	* Thank you for making the corrections to your translation. You are still missing the first amino acid from frame "-2".
		+	* The category is still missing from this page.
		+
		+	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 15:04, 11 October 2013 (PDT)''

	== Week 3 Feedback ==		== Week 3 Feedback ==

← Older revision		Revision as of 21:15, 11 October 2013
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	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 16:04, 8 October 2013 (PDT)''		''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 16:04, 8 October 2013 (PDT)''
		+
		+	=== Week 5 Database Wiki ===
		+
		+	* Your assignment is complete, although it looks like some tweaks were made to it after the deadline. From the history, it looks like you were the main contributor to this page.
		+	* You need to link from the database wiki page to the [[Class Journal Week 5]] page.
		+	* The main classification for Ensembl is that it is a sequence/ genome database.
		+
		+	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 14:15, 11 October 2013 (PDT)

← Older revision		Revision as of 23:04, 8 October 2013
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	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:50, 24 September 2013 (PDT)		—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:50, 24 September 2013 (PDT)
		+
		+	== Week 5 Feedback ==
		+
		+	This is feedback on the Week 5 individual assignment (UniProt Exercise) and shared class reflection. Feedback on your Database wiki page will come later.
		+
		+	* Thank you for submitting your assignment on time.
		+	* Your electronic lab notebook did not contain enough detail such that you or another person could reproduce what you did using only the information from your journal entry. Starting again with the [[Week 8]] assignment, keeping an online notebook will be an important part of your weekly assignments. Look at some of your classmates' entries to see some examples and please let us know if you have any questions.
		+	* Remember to link your journal page back to your user page and to add the category "Journal Entry". You should add these links to your template and then use your template on each journal page that you complete.
		+
		+	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 16:04, 8 October 2013 (PDT)''

← Older revision		Revision as of 05:50, 25 September 2013
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	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:21, 14 September 2013 (PDT)		—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:21, 14 September 2013 (PDT)
		+
		+	== Week 4 Feedback ==
		+
		+	Thank you for submitting your work on time! Here’s how your “automated annotation” work turned out, item by item. Items that had issues are italicized:
		+	* -35 box was correctly identified with an appropriate command.
		+	* -10 box was correctly identified with an appropriate command.
		+	* ''Transcription start site was not identified.''
		+	* Ribosome binding site was correctly identified with an appropriate command.
		+	* Start codon was correctly identified with an appropriate command.
		+	* ''Stop codon was not correctly identified because the command did not enforce solely triplets after the start codon.''
		+	* ''The terminator is missing the complete hairpin sequence.''
		+	* ''The identified mRNA strand is short—you only returned the start-to-stop codon, but transcription actually goes from the transcription start site to the end of the terminator. In addition, it appears that this sequence was derived manually.''
		+	* ''The identified amino acid sequence is short, and no command was supplied so it is not clear where the computation went wrong.''
		+	In terms of your wiki link routine, everything was there except for:
		+	* The specified category designation for your individual assignment page.
		+	Let me know if you have any questions.
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:50, 24 September 2013 (PDT)

← Older revision		Revision as of 05:21, 15 September 2013
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	P.S. I answered your question on my user talk page. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 09:15, 12 September 2013 (PDT)''		P.S. I answered your question on my user talk page. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 09:15, 12 September 2013 (PDT)''
		+
		+	== Week 3 Feedback ==
		+
		+	* Thank you for submitting your assignment on time!
		+	* You missed the '''cat''' command at the beginning of your reading frame answers. This is not a huge deal, but remember how attention to detail is a very important part of working with computers.
		+	* Your '''sed''' and '''match''' skills are otherwise great! All of your commands were correct.
		+	* Thank you for providing a complete set of links across your user page, assignment page, shared journal page, and individual journal answer page. These really help us to get around from one page to another.
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:21, 14 September 2013 (PDT)

← Older revision		Revision as of 16:15, 12 September 2013
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	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 14:54, 11 September 2013 (PDT)''		''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 14:54, 11 September 2013 (PDT)''
		+
		+	P.S. I answered your question on my user talk page. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 09:15, 12 September 2013 (PDT)''