User talk:Laurmagee - Revision history

Dondi: Add week 9 feedback.

2013-11-29T21:27:51Z

Add week 9 feedback.

Dondi: /* Week 6 Feedback */ new section

2013-10-12T18:46:16Z

‎Week 6 Feedback: new section

Kdahlquist: /* Week 2 Feedback */ follow-up

2013-10-11T22:03:37Z

‎Week 2 Feedback: follow-up

Kdahlquist: /* Week 5 Feedback */ note that week 5 database wiki is missing

2013-10-11T21:02:12Z

‎Week 5 Feedback: note that week 5 database wiki is missing

Kdahlquist: /* Week 5 Feedback */ note about wrong ID and PDF

2013-10-08T23:14:04Z

‎Week 5 Feedback: note about wrong ID and PDF

Kdahlquist: completed week 5 feedback

2013-10-08T23:12:33Z

completed week 5 feedback

Dondi: /* Makeup Point Update */ Clarify that the update pertained to week 3 page.

2013-09-30T05:34:47Z

‎Makeup Point Update: Clarify that the update pertained to week 3 page.

Dondi: /* Makeup Point Update */ new section

2013-09-30T05:02:40Z

‎Makeup Point Update: new section

Dondi: /* Week 4 Feedback */ new section

2013-09-25T05:19:10Z

‎Week 4 Feedback: new section

Dondi: /* Week 3 Feedback */ new section

2013-09-15T05:18:04Z

‎Week 3 Feedback: new section

← Older revision		Revision as of 21:27, 29 November 2013
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		+	== Week 9 Feedback ==
		+
		+	Your week 9 work has (finally) been reviewed:
		+	* You listed the four file versions specified by the testing report template.
		+	* You logged all of the needed import/processing/export times.
		+	* You successfully uploaded your .gdb file to the wiki.
		+	* You successfully ran the Tally Engine.
		+	* You successfully ran xmlpipedb-match.
		+	* You successfully ran the appropriate PostgreSQL query.
		+	* You successfully examined your .gdb file in Microsoft Access but did not compare the data against the benchmark version of the ''V. cholerae'' gene database.
		+	* You correctly noted differences and similarities in the ID tallies from your various counts.
		+	* You clearly indicated the ID pattern used for your ID searches/tallies.
		+	* Your lab notebook effectively documents your activities and results for this assignment.
		+
		+	Finally, your work was submitted on time and all specified wiki links and navigational aids were correctly included. Well done!
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 13:27, 29 November 2013 (PST)
		+
	== Week 1 Feedback ==		== Week 1 Feedback ==

← Older revision		Revision as of 18:46, 12 October 2013
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	* This assignment is incomplete; I did not find a wiki page for GeneDB, am I missing something? ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 14:02, 11 October 2013 (PDT)''		* This assignment is incomplete; I did not find a wiki page for GeneDB, am I missing something? ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 14:02, 11 October 2013 (PDT)''
		+
		+	== Week 6 Feedback ==
		+
		+	Thank you for submitting everything super early!
		+	* The wiki markup for movies-with-apostrophe query does not reproduce the query correctly because the wiki interprets repeated apostrophes as starting either bold or italic text; to render the apostrophes accurately, you need the '''nowiki''' tag (like this: <nowiki>''''</nowiki> [view the wiki source to see how it’s done]).
		+	* In your movies-beginning-with-the-word-“Star” query, you miss adding a space at the end of the ''"^Star"'' pattern—this matches more rows than desired, because without the space, your query will also get movies whose titles start with the words “Stare,” “Startle,” “Stark,” or “Start,” to name a few.
		+	* The 5th and 8th queries, which request counts by certain categories (year in the 5th query; rating in the 8th), require a ''group by'' clause in order to deliver the answers with maximum efficiency. Your answer to the 5th query involves multiple separate retrievals, where the use of ''group by'' would reduce that to a single one; your answer to the 8th query returns the “lump sum” count, and not the count for each individual rating.
		+	* The 7th query does not include the name of the ''member''s who submitted each rating; this information was explicitly requested.
		+	* All your other database queries were correct and properly documented.
		+	Your standardized wiki links and elements are all there except for the link from the journal page to the user page. Try to maintain a “flight check” list of these items (note how they are listed in every assignment) so that this becomes as worry-free as possible.
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 11:46, 12 October 2013 (PDT)

← Older revision		Revision as of 22:03, 11 October 2013
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	P.S. I answered your question on my user talk page. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 09:12, 12 September 2013 (PDT)''		P.S. I answered your question on my user talk page. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 09:12, 12 September 2013 (PDT)''
		+
		+	=== Week 2 Follow-up ===
		+
		+	* Thank you for making the corrections to your translation, moving your page, and adding the requested links. However, the category is still missing from this page.
		+
		+	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 15:03, 11 October 2013 (PDT)''

	== Week 3 Feedback ==		== Week 3 Feedback ==

← Older revision		Revision as of 21:02, 11 October 2013
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	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 16:12, 8 October 2013 (PDT)''		''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 16:12, 8 October 2013 (PDT)''
		+
		+	=== Week 5 Database Wiki ===
		+
		+	* This assignment is incomplete; I did not find a wiki page for GeneDB, am I missing something? ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 14:02, 11 October 2013 (PDT)''

@@ Line 93: / Line 93: @@
 * Thank you for submitting your assignment on time.
-* Your electronic lab notebook was an adequate description of what you did.  Moving forward starting with the [[Week 8]] assignment, this will be an important part of each weekly assignment.  Keep in mind the guideline that you or someone else should be able to reproduce what you did using only the information on your journal entry page.  Your page could have been enhanced by providing hyperlinks to the pages you visited and by showing one or more screenshots from your database exploration.
+* Your electronic lab notebook was an adequate description of what you did, although you listed the identifier for the EGFR protein incorrectly.  Also, I think you were mixing up the PDB and PubMed databases.
 ''&mdash; [[User:Kdahlquist|Kdahlquist]] ([[User talk:Kdahlquist|talk]]) 16:12, 8 October 2013 (PDT)''

← Older revision		Revision as of 23:12, 8 October 2013
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	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:02, 29 September 2013 (PDT)		—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:02, 29 September 2013 (PDT)
		+
		+	== Week 5 Feedback ==
		+
		+	This is feedback on the Week 5 individual assignment (UniProt Exercise) and shared class reflection. Feedback on your Database wiki page will come later.
		+
		+	* Thank you for submitting your assignment on time.
		+	* Your electronic lab notebook was an adequate description of what you did. Moving forward starting with the [[Week 8]] assignment, this will be an important part of each weekly assignment. Keep in mind the guideline that you or someone else should be able to reproduce what you did using only the information on your journal entry page. Your page could have been enhanced by providing hyperlinks to the pages you visited and by showing one or more screenshots from your database exploration.
		+
		+	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 16:12, 8 October 2013 (PDT)''

@@ Line 82: / Line 82: @@
 You have been credited for making the following change(s) to a wiki link checklist:
-* The missing ''Journal Entry'' category in your journal answer page has been added.
+* The missing ''Journal Entry'' category in your Week 3 journal answer page has been added.
 If you have any questions, let me know. Thank you!
 —[[User:Dondi|Dondi]] ([[User talk:Dondi|talk]]) 22:02, 29 September 2013 (PDT)

← Older revision		Revision as of 05:02, 30 September 2013
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	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:19, 24 September 2013 (PDT)		—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:19, 24 September 2013 (PDT)
		+
		+	== Makeup Point Update ==
		+
		+	You have been credited for making the following change(s) to a wiki link checklist:
		+	* The missing ''Journal Entry'' category in your journal answer page has been added.
		+
		+	If you have any questions, let me know. Thank you!
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:02, 29 September 2013 (PDT)

← Older revision		Revision as of 05:19, 25 September 2013
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	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:18, 14 September 2013 (PDT)		—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:18, 14 September 2013 (PDT)
		+
		+	== Week 4 Feedback ==
		+
		+	Thank you for submitting your work on time! Here’s how your “automated annotation” work turned out, item by item. Items that had issues are italicized:
		+	* ''-35 box was almost correctly identified but there was a space missing in one of your commands.''
		+	* ''-10 box command did not refine the search pattern to highlight the correct one (there were two possibilities and the only way to distinguish one from the other was to identify the one that came after the -35 box).''
		+	* ''Your transcription start site command counted off the -10 box in the wrong direction.''
		+	* Ribosome binding site was correctly identified with an appropriate command, ''but the first to statements of that command had a typo (missing '''g''')''.
		+	* Start codon was correctly identified with an appropriate command.
		+	* ''Stop codon was not correctly identified by the provided command (it missed counting off in threes from the start codon).''
		+	* ''You missed the full hairpin sequence of the terminator.''
		+	* ''The incorrect mRNA strand was identified, and no command was provided to indicate where things might have gone wrong.''
		+	* ''The incorrect amino acid sequence was identified, and no command was provided to indicate where things might have gone wrong.''
		+	In terms of your wiki link routine, everything was there—keep it up!
		+
		+	Let me know if you have any questions.
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:19, 24 September 2013 (PDT)

← Older revision		Revision as of 05:18, 15 September 2013
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	P.S. I answered your question on my user talk page. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 09:12, 12 September 2013 (PDT)''		P.S. I answered your question on my user talk page. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 09:12, 12 September 2013 (PDT)''
		+
		+	== Week 3 Feedback ==
		+
		+	* Thank you for submitting your assignment on time!
		+	* Your experience with “Where’s my stuff” typically occurs when a computing system is strongly protecting file extensions like ''.txt'' and ''.html''. Different operating systems apply protections differently. Typically, there is a setting one can hit that tells the computer that you know what you are doing with respect to these extensions, after which you will then have greater control over these. In any case, nothing to worry about; what matters is that you got a sense for what role these file extensions play.
		+	* Your '''sed''' and '''match''' skills are great! All of your commands were correct, save for what I will chalk up to a typo in your '''sed''' commands: the portion that is meant to separate the nucleotides into triplets is missing a space after the '''&''' character. This space is very important, because it enforces the triplet grouping of the bases. At the same time, spaces are also easy to miss, so keep a close eye on what lands on your wiki from your command window.
		+	* Your journal answer page was missing the requested ''Journal Entry'' category—please note the bulleted checklist provided under the assignment headings so that you don’t miss these in future assignments.
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:18, 14 September 2013 (PDT)