User talk:Mpetredi - Revision history

Dondi: Add week 9 feedback.

2013-11-30T00:26:39Z

Add week 9 feedback.

Kdahlquist: /* Week 8 Interim Feedback */ note about filename

2013-10-14T22:41:53Z

‎Week 8 Interim Feedback: note about filename

Kdahlquist: week 8 interim feedback, files OK

2013-10-14T22:02:14Z

week 8 interim feedback, files OK

Dondi: /* Week 6 Feedback */ new section

2013-10-12T05:50:30Z

‎Week 6 Feedback: new section

Kdahlquist: /* Week 5 Feedback */ gave feedback on database wiki

2013-10-11T21:22:02Z

‎Week 5 Feedback: gave feedback on database wiki

Kdahlquist: /* Week 5 Feedback */ completed week 5 feedback

2013-10-08T23:00:38Z

‎Week 5 Feedback: completed week 5 feedback

Kdahlquist: started section for week 5 feedback

2013-10-08T22:58:26Z

started section for week 5 feedback

Dondi: /* Makeup Point Update */ new section

2013-09-30T05:07:31Z

‎Makeup Point Update: new section

Dondi: /* Week 4 Feedback */ new section

2013-09-25T06:14:00Z

‎Week 4 Feedback: new section

Dondi: /* Week 3 Feedback */ new section

2013-09-15T05:31:46Z

‎Week 3 Feedback: new section

← Older revision		Revision as of 00:26, 30 November 2013
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		+	== Week 9 Feedback ==
		+
		+	Your week 9 work has (finally) been reviewed:
		+	* Three out of the four file versions, as specified by the testing report template, are not listed.
		+	* You logged relevant import/processing/export times.
		+	* You successfully uploaded your .gdb file to the wiki.
		+	* You successfully ran the Tally Engine.
		+	* You successfully ran xmlpipedb-match.
		+	* You successfully ran the appropriate PostgreSQL query.
		+	* You successfully examined your .gdb file in Microsoft Access but did not compare the data against the benchmark version of the ''V. cholerae'' gene database.
		+	* You correctly noted differences and similarities in the ID tallies from your various counts.
		+	* You clearly indicated the ID pattern used for your ID searches/tallies.
		+	* Your lab notebook effectively documents your activities and results for this assignment.
		+
		+	Finally, your work was submitted on time and all specified wiki links and navigational aids were correctly included, except for the link from your individual journal entry page back to your user page.
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 16:26, 29 November 2013 (PST)
		+
	== Week 8 Interim Feedback ==		== Week 8 Interim Feedback ==

← Older revision		Revision as of 22:41, 14 October 2013
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	* I have checked your .xls and .txt files and they are correct and ready for tomorrow's exercise. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 15:02, 14 October 2013 (PDT)''		* I have checked your .xls and .txt files and they are correct and ready for tomorrow's exercise. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 15:02, 14 October 2013 (PDT)''
		+	* Also, please follow the convention for naming your files given in the assignment. For example, my file would be named "Merrell_Compiled_Raw_Data_Vibrio_KD_20091020.xls". Your filename needs to have a date included and should have the extraneous hyphen removed. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 15:41, 14 October 2013 (PDT)''

	== Week 1 Feedback ==		== Week 1 Feedback ==

← Older revision		Revision as of 22:02, 14 October 2013
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		+	== Week 8 Interim Feedback ==
		+
		+	* I have checked your .xls and .txt files and they are correct and ready for tomorrow's exercise. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 15:02, 14 October 2013 (PDT)''
		+
	== Week 1 Feedback ==		== Week 1 Feedback ==

← Older revision		Revision as of 05:50, 12 October 2013
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	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 14:22, 11 October 2013 (PDT)		''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 14:22, 11 October 2013 (PDT)
		+
		+	== Week 6 Feedback ==
		+
		+	Thank you for submitting everything on time!
		+	* The wiki markup for movies-with-apostrophe query does not reproduce the query correctly because the wiki interprets repeated apostrophes as starting either bold or italic text; to render the apostrophes accurately, you need the '''nowiki''' tag (like this: <nowiki>''''</nowiki> [view the wiki source to see how it’s done]).
		+	* All your other database queries were correct and properly documented.
		+	* You have settled very nicely into the habit of providing all of the requested links that make the navigation of your wiki work as easy as possible.
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:50, 11 October 2013 (PDT)

← Older revision		Revision as of 21:22, 11 October 2013
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	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 16:00, 8 October 2013 (PDT)''		''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 16:00, 8 October 2013 (PDT)''
		+
		+	=== Week 5 Database Wiki ===
		+
		+	* Your assignment is complete, although it looks like some tweaks were made to it after the deadline. From the history, it appears that you were the main contributor to this page.
		+	* I see that you used a template to move this page content to one with the proper name. There is a better way to move pages, see the drop down arrow next to the "View history" tab at the top of the page.
		+	* Be careful about the formatting of your hyperlinks. Only use two square brackets when linking to internal wiki pages; external links use only single square brackets. Also, the numbering of your page with respect to the questions is off.
		+	* You could have elaborated a bit more on your answers to the questions.
		+
		+	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 14:22, 11 October 2013 (PDT)

← Older revision		Revision as of 23:00, 8 October 2013
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	This is feedback on the Week 5 individual assignment (UniProt Exercise) and shared class reflection. Feedback on your Database wiki page will come later.		This is feedback on the Week 5 individual assignment (UniProt Exercise) and shared class reflection. Feedback on your Database wiki page will come later.
		+
		+	* Thank you for submitting your assignment on time.
		+	* Your electronic lab notebook was neat and complete. Moving forward starting with the [[Week 8]] assignment, this will be an important part of each weekly assignment. Keep in mind the guideline that you or someone else should be able to reproduce what you did using only the information on your journal entry page. Your page could have been enhanced by showing one or more screenshots from your database exploration.
		+
		+	''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 16:00, 8 October 2013 (PDT)''

← Older revision		Revision as of 22:58, 8 October 2013
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	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:07, 29 September 2013 (PDT)		—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:07, 29 September 2013 (PDT)
		+
		+	== Week 5 Feedback ==
		+
		+	This is feedback on the Week 5 individual assignment (UniProt Exercise) and shared class reflection. Feedback on your Database wiki page will come later.

← Older revision		Revision as of 05:07, 30 September 2013
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	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 23:14, 24 September 2013 (PDT)		—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 23:14, 24 September 2013 (PDT)
		+
		+	== Makeup Point Update ==
		+
		+	You have been credited for making the following change(s) to a wiki link checklist:
		+	* The missing link from your user page to the Week 3 shared journal page has been added.
		+	* The missing link from your user page to the Week 3 assignment page has been added.
		+
		+	If you have any questions, let me know. Thank you!
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:07, 29 September 2013 (PDT)

← Older revision		Revision as of 06:14, 25 September 2013
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	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:31, 14 September 2013 (PDT)		—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:31, 14 September 2013 (PDT)
		+
		+	== Week 4 Feedback ==
		+
		+	Thank you for submitting your work on time! Here’s how your “automated annotation” work turned out, item by item. Items that had issues are italicized:
		+	* -35 box was correctly identified with an appropriate command.
		+	* -10 box was correctly identified with an appropriate command.
		+	* ''Your transcription start site was incorrectly identified.''
		+	* Ribosome binding site was correctly identified with an appropriate command.
		+	* Start codon was correctly identified with an appropriate command.
		+	* ''The given stop codon command did not enforce triplets after the start codon.''
		+	* The terminator signal was correctly identified ''but the given command makes assumptions about exactly how long the terminator is, requiring a priori knowledge that was not part of the consensus information''.
		+	* ''The mRNA strand is incorrect—it is '''not''' the entire sequence, and it is complemented when it should not be.''
		+	* The correct amino acid sequence was identified ''but the command that computed it was not provided''.
		+	In terms of your wiki link routine, everything was there—keep it up!
		+
		+	Let me know if you have any questions.
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 23:14, 24 September 2013 (PDT)

← Older revision		Revision as of 05:31, 15 September 2013
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	P.S. I answered your question on my user talk page. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 09:18, 12 September 2013 (PDT)''		P.S. I answered your question on my user talk page. ''— [[User:Kdahlquist\|Kdahlquist]] ([[User talk:Kdahlquist\|talk]]) 09:18, 12 September 2013 (PDT)''
		+
		+	== Week 3 Feedback ==
		+
		+	* Thank you for submitting your assignment on time!
		+	* Good to hear that you succeeded in exerting control of your file extensions.
		+	* Your '''sed''' and '''match''' skills are great with the exception of your 3'-5' +2 and +3 reading frame commands—you were eliminating the “skipped” bases ''before'' reversing the string and not after.
		+	* For the first '''match''' question, you missed writing down your speculative answer on what that ''GO:...'' pattern may represent.
		+	* You were missing a number of requested links and wiki elements:
		+	** Your user page was missing a link to the shared journal page
		+	** Your user page was also missing a link to the [[Week 3]] assignment page
		+	:Please note the bulleted checklist provided under the assignment headings so that you don’t miss these in future assignments. A template will help, so that you will only need to edit these links in one place. Let me know if you need additional help with getting a template to work as needed.
		+
		+	—[[User:Dondi\|Dondi]] ([[User talk:Dondi\|talk]]) 22:31, 14 September 2013 (PDT)