https://xmlpipedb.lmucs.io/biodb/fall2013/index.php?action=history&feed=atom&title=Vkuehn_Week_9Vkuehn Week 9 - Revision history2026-06-02T22:57:33ZRevision history for this page on the wikiMediaWiki 1.20.3https://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Vkuehn_Week_9&diff=4121&oldid=prevVkuehn: /* Exporting Information */2013-10-24T18:27:58Z<p><span dir="auto"><span class="autocomment">Exporting Information</span></span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>GO OBO-XML filename: go_daily-termdbVK2013.10.22.obo-xml</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>GO OBO-XML filename: go_daily-termdbVK2013.10.22.obo-xml</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* GO OBO-XML version (The version information can be found in the file properties after the file downloaded from the [http://beta.geneontology.org/page/download-ontology GO Download page] has been unzipped):<del class="diffchange diffchange-inline">[[File:Go_daily-termdb.obo-xmlVK10.21.2013.gz]]</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* GO OBO-XML version (The version information can be found in the file properties after the file downloaded from the [http://beta.geneontology.org/page/download-ontology GO Download page] has been unzipped):</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Time taken to import: 5.98 minutes</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Time taken to import: 5.98 minutes</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Time taken to process: 4.35 minutes</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Time taken to process: 4.35 minutes</div></td></tr>
</table>Vkuehnhttps://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Vkuehn_Week_9&diff=4120&oldid=prevVkuehn: /* Visual Inspection */2013-10-24T18:27:24Z<p><span dir="auto"><span class="autocomment">Visual Inspection</span></span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Open the UniProt, RefSeq, and OrderedLocusNames tables. Scroll down through the table. Do all of the IDs look like they take the correct form for that type of ID?\</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Open the UniProt, RefSeq, and OrderedLocusNames tables. Scroll down through the table. Do all of the IDs look like they take the correct form for that type of ID?\</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*:Most of the data seems the same. The one that was different was the Ordered Locus Names. There was one too many. After looking at the specific ID that was different it was clear that there was one that was named VC####/VC#### that was considered the same gene but in access it was separated into two.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*:Most of the data seems the same. The one that was different was the Ordered Locus Names. There was one too many. After looking at the specific ID that was different it was clear that there was one that was named VC####/VC#### that was considered the same gene but in access it was separated into two.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">*:We were unable to move past this step because the data we analyzed does not have all of the gene IDs in it. There was data that appeared as VC_#### and data that was named VC####. Our results only accounted for the one with the underscore so we are not able to upload this data until this problem is fixed.</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==.gdb Use in GenMAPP==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==.gdb Use in GenMAPP==</div></td></tr>
</table>Vkuehnhttps://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Vkuehn_Week_9&diff=4113&oldid=prevVkuehn: /* Compare Gene Database to Outside Resource */2013-10-24T18:24:38Z<p><span dir="auto"><span class="autocomment">Compare Gene Database to Outside Resource</span></span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><!--In this example, this query tells you which IDs are in Riley only:<br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><!--In this example, this query tells you which IDs are in Riley only:<br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>select Riley.ID from Riley left outer join Blattner on Riley.ID = Blattner.ID where Blattner.ID is null;--></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>select Riley.ID from Riley left outer join Blattner on Riley.ID = Blattner.ID where Blattner.ID is null;--></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">[[</del>Template: Vkuehn<del class="diffchange diffchange-inline">]]</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">{{</ins>Template: Vkuehn<ins class="diffchange diffchange-inline">}}</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category: Journal Entry]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Category: Journal Entry]]</div></td></tr>
</table>Vkuehnhttps://xmlpipedb.lmucs.io/biodb/fall2013/index.php?title=Vkuehn_Week_9&diff=4112&oldid=prevVkuehn: /* Exporting Information */2013-10-24T18:24:06Z<p><span dir="auto"><span class="autocomment">Exporting Information</span></span></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 18:24, 24 October 2013</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>GO OBO-XML filename: go_daily-termdbVK2013.10.22.obo-xml</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>GO OBO-XML filename: go_daily-termdbVK2013.10.22.obo-xml</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* GO OBO-XML version (The version information can be found in the file properties after the file downloaded from the [http://beta.geneontology.org/page/download-ontology GO Download page] has been unzipped):</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* GO OBO-XML version (The version information can be found in the file properties after the file downloaded from the [http://beta.geneontology.org/page/download-ontology GO Download page] has been unzipped):<ins class="diffchange diffchange-inline">[[File:Go_daily-termdb.obo-xmlVK10.21.2013.gz]]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Time taken to import: 5.98 minutes</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Time taken to import: 5.98 minutes</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Time taken to process: 4.35 minutes</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>* Time taken to process: 4.35 minutes</div></td></tr>
</table>Vkuehn
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