Week 5 - Revision history

Laurmagee: Correct Spelling of Lauren

2013-09-21T02:36:55Z

Correct Spelling of Lauren

2013-09-18T22:56:10Z

removed stray comma

2013-09-18T22:55:53Z

amended that wiki page will be graded separately for 20 points

2013-09-18T22:40:19Z

removed under construction template

2013-09-18T22:39:22Z

‎NAR Exercise and Presentation: added in buddy assignments

2013-09-18T22:28:48Z

‎UniProt Exercise: redlink to MyLMUConnect

2013-09-18T22:22:17Z

‎Additional UniProt Resources: removed another dead link

2013-09-18T22:21:34Z

‎Additional UniProt Resources: replaced EBI link to UniProt Quick tour

2013-09-18T22:19:41Z

‎Additional UniProt Resources: removed broken video link

2013-09-18T22:14:55Z

‎Additional UniProt Resources: updated link to UniProt 2013 article in NAR

@@ Line 76: / Line 76: @@
 * Gabriel - Katrina
 * Stephen - Alina
-* Laruen - Dillon
+* Lauren - Dillon
 === Database Wiki Page ===

@@ Line 4: / Line 4: @@
 ''A note on the grading for this assignment:''
-* The individual journal entry, and shared journal entries are worth a total of 10 points.  Students will be graded on an individual basis for this portion of the assignment.
+* The individual journal entry and shared journal entries are worth a total of 10 points.  Students will be graded on an individual basis for this portion of the assignment.
 * The database wiki page is worth a total of 20 points; each member of the group will receive the same grade for this portion of the assignment.
 * The presentation is worth a total of 20 points; each member of the group will receive the same grade for this portion of the assignment.

@@ Line 5: / Line 5: @@
 ''A note on the grading for this assignment:''
 * The individual journal entry, and shared journal entries are worth a total of 10 points.  Students will be graded on an individual basis for this portion of the assignment.
-* The database wiki page and presentation is worth a total of 20 points; each member of the group will receive the same grade for this portion of the assignment.
+* The database wiki page is worth a total of 20 points; each member of the group will receive the same grade for this portion of the assignment.
 {{Individual Journal Instructions|week=5}}

← Older revision		Revision as of 22:40, 18 September 2013
Line 1:		Line 1:
−	~~{{Under Construction}}~~
−
	'''The individual journal entry (UniProt exercise) is due on Friday, September 27, at midnight PDT.''' ''(Thursday night/Friday morning)''		'''The individual journal entry (UniProt exercise) is due on Friday, September 27, at midnight PDT.''' ''(Thursday night/Friday morning)''

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 For this exercise, you will work with an assigned buddy.  Choose a database from this issue and answer the following questions about that database.  Each pair should choose a different database to profile.  So, to claim your first choice, go to the [[Class Journal Week 5]] page and stake your claim to a database.  When you are choosing your database, look at the other students' entries to make sure you are not doing the same one. The buddy assignments are:
-* ''To be determined''
 === Database Wiki Page ===

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 === UniProt Exercise ===
-For this exercise, you will read and follow the links in [[Media:BioinformaticsForDummies_Ch4_2003_edited.pdf | Chapter 4: Using Protein and Specialized Sequence Databases of the book ''Bioinformatics for Dummies'']].  We are delving quite deeply into UniProt in particular because the gene databases that you will generate later in the semester in your final project are going to be derived from UniProt.
+For this exercise, you will read and follow the links in [https://mylmuconnect.blackboard.com/webapps/portal/frameset.jsp?tab_tab_group_id=_2_1&url=%2Fwebapps%2Fblackboard%2Fexecute%2Flauncher%3Ftype%3DCourse%26id%3D_35506_1%26url%3D Chapter 4: Using Protein and Specialized Sequence Databases of the book ''Bioinformatics for Dummies'' (on MyLMU Connect)].  We are delving quite deeply into UniProt in particular because the gene databases that you will generate later in the semester in your final project are going to be derived from UniProt.
 '''For this assignment, you will keep an electronic laboratory notebook on your individual journal page that records the steps you carried out in exploring the UniProtKB.'''

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 * [http://nar.oxfordjournals.org/content/41/D1/D43.full UniProt NAR Database Issue 2013 article]
 * [http://www.ebi.ac.uk/training/online/course/uniprot-quick-tour EBI Training: UniProt Quick Tour]
 == NAR Exercise and Presentation ==

@@ Line 54: / Line 54: @@
 * [http://nar.oxfordjournals.org/content/41/D1/D43.full UniProt NAR Database Issue 2013 article]
-* [http://www.ebi.ac.uk/2can/tutorials/protein/blast5.html EBI guide to interpreting an UniProt record]
+* [http://www.ebi.ac.uk/training/online/course/uniprot-quick-tour EBI Training: UniProt Quick Tour]
 * [http://www.uniprot.org/demos/diabetes UniProt demo from UniProt itself]

@@ Line 53: / Line 53: @@
 ==== Additional UniProt Resources ====
-* [http://nar.oxfordjournals.org/content/38/suppl_1/D142.full UniProt NAR Database Issue 2010 article]
+* [http://nar.oxfordjournals.org/content/41/D1/D43.full UniProt NAR Database Issue 2013 article]
 * [http://www.youtube.com/watch?v=TCF3qWn7siI YouTube video tutorial about UniProt (8:17 minutes)]
 * [http://www.ebi.ac.uk/2can/tutorials/protein/blast5.html EBI guide to interpreting an UniProt record]