Difference between revisions of "Ksherbina Week 7"
From LMU BioDB 2013
(→Answers to Discovery Questions from Chapter 4 of Discovering Genomics, Proteomics, and Bioinformatics: Separated answers to question 7 and 9.) |
(→Answers to Discovery Questions from Chapter 4 of Discovering Genomics, Proteomics, and Bioinformatics: Altered question 6b Gene Y 3 hour and Gene Y 5 hour. Modified answer to question 9.) |
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| Line 8: | Line 8: | ||
:Gene X 9 hour: medium green | :Gene X 9 hour: medium green | ||
:Gene Y 1 hour: black | :Gene Y 1 hour: black | ||
| − | :Gene Y 3 hour: | + | :Gene Y 3 hour: medium red |
| − | :Gene Y 5 hour: black | + | :Gene Y 5 hour: dim green (almost black) |
:Gene Y 9 hour: bright green | :Gene Y 9 hour: bright green | ||
:Gene Z 1 hour: black | :Gene Z 1 hour: black | ||
| Line 18: | Line 18: | ||
'''7.''' Gene X and Gene Y were transcribed similarly. The genes were induced after 3 hours, went back to the control state (no fold change) after 5 hours, and were repressed after 9 hours. | '''7.''' Gene X and Gene Y were transcribed similarly. The genes were induced after 3 hours, went back to the control state (no fold change) after 5 hours, and were repressed after 9 hours. | ||
| − | '''9.''' At the first time point, the cell density is very low. Consequently, there is no appreciable depletion of the source of glucose. Since there is no stress present, as there would be if the availability of glucose was decreasing, most of the genes are not being induced or repressed. Thus, most of the spots are yellow. | + | '''9.''' At the first time point, the cell density is very low. Consequently, there is no appreciable depletion of the source of glucose. Since there is no stress present, as there would be if the availability of glucose was significantly decreasing, most of the genes are not being induced or repressed. Thus, most of the spots are yellow. |
[[Category:Journal Entry]] | [[Category:Journal Entry]] | ||
[[Category:Individual Homework]] | [[Category:Individual Homework]] | ||
Revision as of 08:03, 9 October 2013
| Assignment Description | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 | Week 12 | Week 13 | Week 15 |
| Class Journal | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | |||||
| Individual Journal | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 |
| Other | Week 5: Database Wiki |
| Final Project | Team H(oo)KD Project Page | Journal Club Presentation | Project Individual Journal |
Answers to Discovery Questions from Chapter 4 of Discovering Genomics, Proteomics, and Bioinformatics
6b. Gene X 1 hour: black
- Gene X 3 hour: dim red
- Gene X 5 hour: black
- Gene X 9 hour: medium green
- Gene Y 1 hour: black
- Gene Y 3 hour: medium red
- Gene Y 5 hour: dim green (almost black)
- Gene Y 9 hour: bright green
- Gene Z 1 hour: black
- Gene Z 3 hour: dim red
- Gene Z 5 hour: dim red
- Gene Z 8 hour: dim red
7. Gene X and Gene Y were transcribed similarly. The genes were induced after 3 hours, went back to the control state (no fold change) after 5 hours, and were repressed after 9 hours.
9. At the first time point, the cell density is very low. Consequently, there is no appreciable depletion of the source of glucose. Since there is no stress present, as there would be if the availability of glucose was significantly decreasing, most of the genes are not being induced or repressed. Thus, most of the spots are yellow.
