Difference between revisions of "Ksherbina Week 8"
From LMU BioDB 2013
(→Lab Journal: Statistical Analysis of Vibrio cholerae Microarray Data: Added links to the Excel file and txt file produced when performing the statistical analysis.) |
(Added section to record steps to complete the MAPPFinder analysis. Italicized text in the first header.) |
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{{Ksherbina}} | {{Ksherbina}} | ||
| − | ==Lab Journal: Statistical Analysis of Vibrio cholerae Microarray Data== | + | ==Lab Journal: Statistical Analysis of ''Vibrio cholerae'' Microarray Data== |
#Download the file '''Merrell_Compiled_Raw_Data_Vibrio.xls''' from the [http://www.openwetware.org/wiki/BIOL398-01/S10:Sample_Microarray_Analysis_Vibrio_cholerae Sample Microarray Analysis for ''Vibrio cholerae'' page]. | #Download the file '''Merrell_Compiled_Raw_Data_Vibrio.xls''' from the [http://www.openwetware.org/wiki/BIOL398-01/S10:Sample_Microarray_Analysis_Vibrio_cholerae Sample Microarray Analysis for ''Vibrio cholerae'' page]. | ||
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The resulting Excel file can be downloaded [[Media:Merrell Compiled Raw Data Vibrio KS 20131010.xls|here]]. The text file to be used for GenMapp can be downloaded [[Media:Merrell Compiled Raw Data Vibrio KS 20131010.txt|here]]. | The resulting Excel file can be downloaded [[Media:Merrell Compiled Raw Data Vibrio KS 20131010.xls|here]]. The text file to be used for GenMapp can be downloaded [[Media:Merrell Compiled Raw Data Vibrio KS 20131010.txt|here]]. | ||
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| + | ==Lab Journal: MAPPFinder Analysis of ''Vibrio cholerae'' Microarray Data== | ||
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[[Category:Journal Entry]] | [[Category:Journal Entry]] | ||
[[Category:Individual Homework]] | [[Category:Individual Homework]] | ||
Revision as of 16:51, 15 October 2013
| Assignment Description | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 | Week 12 | Week 13 | Week 15 |
| Class Journal | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | |||||
| Individual Journal | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 |
| Other | Week 5: Database Wiki |
| Final Project | Team H(oo)KD Project Page | Journal Club Presentation | Project Individual Journal |
Lab Journal: Statistical Analysis of Vibrio cholerae Microarray Data
- Download the file Merrell_Compiled_Raw_Data_Vibrio.xls from the Sample Microarray Analysis for Vibrio cholerae page.
- Rename the file in the following format: Merrell_Compiled_Raw_Data_Vibrio_<Initials>_<Date>.xls
- Open the file. Insert a new worksheet and name it "scaled_centered".
- Go back to the "compiled_raw_data" worksheet, Select All and Copy. Go to your new "scaled_centered" worksheet, click on the upper, left-hand cell (cell A1) and Paste.
- Insert two rows in between the top row of headers and the first data row.
- In cell A2, type "Average" and in cell A3, type "StdDev".
The resulting Excel file can be downloaded here. The text file to be used for GenMapp can be downloaded here.
