*Customize the new Expression Dataset by creating new Color Sets which contain the instructions to GenMAPP for displaying data on MAPPs.

* Input the "Avg_LogFC_all" for the Vibrio dataset created in the excel file

[[File:ExpressiondatasetVK.PNG|thumb|right]]

* Create criteria builder for "increased":

*: [Avg_LogFC_all] > 0.25 AND [Pvalue] < 0.05

*: Uploaded color sets

−

~~[[File:ExpressiondatasetVK.PNG|thumb|left]]~~

'''MAPPFinder Procedure'''

* Launch MAPPFinder and choose color set and criteria, select gene ontology and p value

* Click "run mappfiner" '''[[Media:MerrellVK.mapp]]'''

* Gene Ontology window will open. All of the Gene Ontology terms that have at least 3 genes measured and a p value of less than 0.05 will be highlighted yellow. A term with a p value less than 0.05 is considered a "significant" result. Browse through the tree to see your results. Click on "ranked list"

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#21 /apps/xmlpipedb/biodb/fall2013/index.php(59): MediaWiki->run()
#22 {main}