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| − | ==Overview of Microarray Data Analysis== | + | =='''[[user:Ajvree|Alina Vreeland]]'''== |
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| − | =Part 1=
| + | *'''What were the main issues with the data and analysis identified by Baggerly and Coombs? What best practices enumerated by DataONE were violated? Which of these did Dr. Baggerly claim were common issues?''' |
| | + | Baggerly and Coombs identified the issues of inconsistent data. DataONE touched upon the issue of being diligent in the entry of data into a spreadsheet, and this was obviously violated, since the data was not able to be successfully reproduced by others. |
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| − | [[Media:Merrell_Compiled_Raw_Data_Vibrio_SL_10102013.txt|Merrell_Compiled_Raw_Data_Vibrio_SL_10102013.txt]]
| + | *'''What recommendations does Dr. Baggerly recommend for reproducible research? How do these correspond to what DataONE recommends?''' |
| | + | He recommends documentation of all steps and checking labels on every gene, etc, so that your peers can easily follow what you're doing, just like keeping an electronic journal in bio databases so that other people can follow the process that you followed. This would include being consistent in how you enter data into your spreadsheet, having all information in one place, and using file types that can be easily used be others in the future, like DataONE stresses in their powerpoint. |
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