Difference between revisions of "Taur.vil Week 10"
From LMU BioDB 2013
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#Searched within results for microarray (56 results) | #Searched within results for microarray (56 results) | ||
#Selected the third option Title: "Identification of Genes That Contribute to the Pathogenesis of Invasive Pneumococcal Disease by In Vivo Transcriptomic Analysis" ([http://apps.webofknowledge.com/full_record.do?product=WOS&search_mode=Refine&qid=4&SID=4FpPeeam4xp5wvHIYs3&page=1&doc=3 link]) | #Selected the third option Title: "Identification of Genes That Contribute to the Pathogenesis of Invasive Pneumococcal Disease by In Vivo Transcriptomic Analysis" ([http://apps.webofknowledge.com/full_record.do?product=WOS&search_mode=Refine&qid=4&SID=4FpPeeam4xp5wvHIYs3&page=1&doc=3 link]) | ||
| − | #*Clicked on links, found in [http://www.ncbi.nlm.nih.gov/pmc/?cmd=Search&term=22778095%5Bpmid%5D PubMed Central], and downloaded [[Media:Article1.pdf|pdf]]. The full article is also available online on [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3418729/?report=classic PubMed Central] and the [http://iai.asm.org/cgi/content/full/80/9/3268 Journal of Infection and Immunology]. The data is accessible at [http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?expt_id=305&action=view&l=a]. | + | #*Clicked on links, found in [http://www.ncbi.nlm.nih.gov/pmc/?cmd=Search&term=22778095%5Bpmid%5D PubMed Central], and downloaded [[Media:Article1.pdf|pdf]]. The full article is also available online on [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3418729/?report=classic PubMed Central] and the [http://iai.asm.org/cgi/content/full/80/9/3268 Journal of Infection and Immunology]. |
| + | #*The data is accessible at [http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?expt_id=305&action=view&l=a]. | ||
#Went back to works citing the reference paper and restricted the search to "gene expression" and "transcription profiling" (8 results). | #Went back to works citing the reference paper and restricted the search to "gene expression" and "transcription profiling" (8 results). | ||
#Selected a paper titled "Global transcription profiling and virulence potential of Streptococcus pneumoniae after serial passage". | #Selected a paper titled "Global transcription profiling and virulence potential of Streptococcus pneumoniae after serial passage". | ||
#*Found journal link [http://www.sciencedirect.com/science/article/pii/S037811190900184X] on the LMU library links page and downloaded the pdf. The pdf is under copyright protection and can be found at [http://ac.els-cdn.com/S037811190900184X/1-s2.0-S037811190900184X-main.pdf?_tid=99f4bfc0-429c-11e3-aef1-00000aab0f01&acdnat=1383272791_5988b606730e935c9a89b816b6f73ef0]. | #*Found journal link [http://www.sciencedirect.com/science/article/pii/S037811190900184X] on the LMU library links page and downloaded the pdf. The pdf is under copyright protection and can be found at [http://ac.els-cdn.com/S037811190900184X/1-s2.0-S037811190900184X-main.pdf?_tid=99f4bfc0-429c-11e3-aef1-00000aab0f01&acdnat=1383272791_5988b606730e935c9a89b816b6f73ef0]. | ||
| − | + | #* The data is accessible at [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12607] and included 2 biological replicates per trial and four spot replicates. | |
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Revision as of 02:39, 1 November 2013
Week 9 Individual Journal
Lab Journal
Finding Reference Paper
- Used PubMed and searched "Streptococcus pneumoniae" & "whole genome" & sequence to find microarray papers
- With Kevin Meilak, found [1]
- In the paper, identified strain R6 (accession no. NC_003098) as the reference sequence
- Searched in UniProt for complete genome taxonomies containing Streptococcus pneumoniae and R6 (search results)
- Found corresponding link in PubMed (link) and followed links to the original paper (link, PDF)
Finding other papers
- In web of science, searched for "Streptococcus pneumoniae strain R6" under title and Hoskins in author to find the reference paper search
- Only the reference paper appeared, and looked at the times cited (412 results)
- Searched within results for microarray (56 results)
- Selected the third option Title: "Identification of Genes That Contribute to the Pathogenesis of Invasive Pneumococcal Disease by In Vivo Transcriptomic Analysis" (link)
- Clicked on links, found in PubMed Central, and downloaded pdf. The full article is also available online on PubMed Central and the Journal of Infection and Immunology.
- The data is accessible at [2].
- Went back to works citing the reference paper and restricted the search to "gene expression" and "transcription profiling" (8 results).
- Selected a paper titled "Global transcription profiling and virulence potential of Streptococcus pneumoniae after serial passage".
- As part of Biological Databases
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