|
|
| | #*Click on the "Search" button to search for an article satisfying the filters that were set. | | #*Click on the "Search" button to search for an article satisfying the filters that were set. |
| | #Go to the last page of the search results. Since you are looking for the first description of the reference genome for the species of interest, the journal article you are looking for will probably be one of the older articles that come up in the search. | | #Go to the last page of the search results. Since you are looking for the first description of the reference genome for the species of interest, the journal article you are looking for will probably be one of the older articles that come up in the search. |
| | + | #*Reference genome article for ''C. trachomatis'': Stephens, R.S., Kalman, S., Lammel, C., Fan, J., Marathe, R., Aravind, L.,... Davis, R.W. (1998) Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis. Science 282: 754-759. |
| | #Click on the link of an article that seems promising. If, after reading the abstract, you believe that this is the article that you are looking for, click on one of the links in the top right under "Links to full text" to retrieve the full article. | | #Click on the link of an article that seems promising. If, after reading the abstract, you believe that this is the article that you are looking for, click on one of the links in the top right under "Links to full text" to retrieve the full article. |
| | + | #Go to the Web of Science database through the link provided in the [http://libguides.lmu.edu/BIOL367 LibGuide] for the class. |
| | + | #In the first blank search field, type in part of the title of the article about the reference genome. |
| | + | #*For the article aforementioned, I typed in "obligate intracellular pathogen". |
| | + | #In the drop down menu to the right, select "Title". |
| | + | #In the next blank search field, type in the author's name. |
| | + | #*For the article aforementioned, I typed in "Stephens". |
| | + | #Click on the "Search" button. One of the results should be the article that you found on the reference genome. |
| | + | #In the citation for the result that matches the title of the article about the reference genome, click on the link that designates the number of times that the article was cited. |
| | | | |
| | ==Locate journal articles that measure gene expression== | | ==Locate journal articles that measure gene expression== |
| | | | |
| | + | ===Locating microarray data on EBI ArrayExpress=== |
| | #Go to the [http://www.ebi.ac.uk/arrayexpress/ EBI ArrayExpress] database. | | #Go to the [http://www.ebi.ac.uk/arrayexpress/ EBI ArrayExpress] database. |
| | #Click on "Experiments" in the navigation toolbar toward the top of the website. | | #Click on "Experiments" in the navigation toolbar toward the top of the website. |
| | #Go to the "By organism" drop down menu in the "Filter Experiments" section. Select the species ''Chlamydia trachomatis''. | | #Go to the "By organism" drop down menu in the "Filter Experiments" section. Select the species ''Chlamydia trachomatis''. |
| | #Click on the "Filter" button to locate the microarray datasets on the database for the selected species. | | #Click on the "Filter" button to locate the microarray datasets on the database for the selected species. |
Unexpected non-MediaWiki exception encountered, of type "Error"
Error: Call to undefined function each() in /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php:374
Stack trace:
#0 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(480): _DiffEngine->_diag()
#1 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(291): _DiffEngine->_compareseq()
#2 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(175): _DiffEngine->diff_local()
#3 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(653): _DiffEngine->diff()
#4 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(820): Diff->__construct()
#5 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(1240): MappedDiff->__construct()
#6 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(1458): WordLevelDiff->__construct()
#7 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(952): TableDiffFormatter->_changed()
#8 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(895): DiffFormatter->_block()
#9 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(765): DiffFormatter->format()
#10 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(655): DifferenceEngine->generateDiffBody()
#11 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(593): DifferenceEngine->getDiffBody()
#12 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(566): DifferenceEngine->getDiff()
#13 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(409): DifferenceEngine->showDiff()
#14 /apps/xmlpipedb/biodb/fall2013/includes/Article.php(725): DifferenceEngine->showDiffPage()
#15 /apps/xmlpipedb/biodb/fall2013/includes/Article.php(478): Article->showDiffPage()
#16 /apps/xmlpipedb/biodb/fall2013/includes/actions/ViewAction.php(37): Article->view()
#17 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(427): ViewAction->show()
#18 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(304): MediaWiki->performAction()
#19 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(536): MediaWiki->performRequest()
#20 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(446): MediaWiki->main()
#21 /apps/xmlpipedb/biodb/fall2013/index.php(59): MediaWiki->run()
#22 {main}