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[[User:Mmalefyt|Mmalefyt]] ([[User talk:Mmalefyt|talk]]) 10:31, 31 October 2013 (PDT) | [[User:Mmalefyt|Mmalefyt]] ([[User talk:Mmalefyt|talk]]) 10:31, 31 October 2013 (PDT) | ||
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| + | *[[http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-785/?keywords=&organism=Sinorhizobium%20meliloti&array=&exptype Osmotic upshift elicited by salt and sucrose]] | ||
| + | **[[http://jb.asm.org/content/188/21/7617 HTML version]] | ||
===Paper Descriptions=== | ===Paper Descriptions=== | ||
:DNA microarrays are used to characterize the Sinorhizobium population. Three distinct DNA regions, or loci, were investigated. These three loci, called “IGSGAB”, “IGSEXO” and “IGSRKP”. The wildtypes acted as the controls while the treatment involved the use of microarray probes. No indication of replications were given. | :DNA microarrays are used to characterize the Sinorhizobium population. Three distinct DNA regions, or loci, were investigated. These three loci, called “IGSGAB”, “IGSEXO” and “IGSRKP”. The wildtypes acted as the controls while the treatment involved the use of microarray probes. No indication of replications were given. | ||
Revision as of 17:58, 5 November 2013
Team 4
Main Paper: The composite genome of the legume symbiont Sinorhizobium meliloti. Science 293, 668–672.
Contents |
Personnel
Stephen Louie
Project Manager, Quality Assurance
- slouie4 at lion.lmu.edu
- 1 LMU Drive MSB 5194
- Los Angeles, CA 90045
Lauren Magee
GenMAPP Expert
- lmagee1 at lion.lmu.edu
- 1 LMU Drive MSB-5258,
- Los Angeles, CA 90045
Mitchell Petredis
Coding Supervisor
- mrpetredis at gmail dot com
- mpetredi at lion dot lmu dot edu
- Loyola Marymount University
- 1 LMU Drive MSB-5957
- Los Angeles, CA 90045-2659
Miles Malefyt
GenMAPP Coordinator
- milesm@malefyt.com
- mmalefyt@lion.lmu.edu
- 8416 Campion drive
- Westchester, CA 90045
cell: 831-236-5402
Mmalefyt (talk) 10:31, 31 October 2013 (PDT)
Micro Array paper
Paper Descriptions
- DNA microarrays are used to characterize the Sinorhizobium population. Three distinct DNA regions, or loci, were investigated. These three loci, called “IGSGAB”, “IGSEXO” and “IGSRKP”. The wildtypes acted as the controls while the treatment involved the use of microarray probes. No indication of replications were given.
- sRNAs are used for gene expression in bacteria. sRNAs were screened for in Sinorhizobium meliloti through the use of microarray hybridizations. It was unapparent whether replications were used in the nature of this experiment.
Citations
Xavier Bailly, Gilles Béna, Vanina Lenief, Philippe de Lajudie, Jean-Christophe Avarre, Development of a lab-made microarray for analyzing the genetic diversity of nitrogen fixing symbionts Sinorhizobium meliloti and Sinorhizobium medicae, Journal of Microbiological Methods, Volume 67, Issue 1, October 2006, Pages 114-124, ISSN 0167-7012, http://dx.doi.org/10.1016/j.mimet.2006.03.006. (http://www.sciencedirect.com/science/article/pii/S0167701206000662)
Jan-Philip Schlüter, Jan Reinkensmeier, Svenja Daschkey, Elena Evguenieva-Hackenberg, Stefan Janssen, Sebastian Jänicke, Jörg D Becker, Robert Giegerich, Anke Becker, A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti BMC Genomics. 2010; 11: 245. Published online 2010 April 17. doi: 10.1186/1471-2164-11-245 PMCID: PMC2873474 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2873474/
More microarray papers can be found at mpetredi Week 10
