*Hydrodynamic shearing - A technique that fragments DNA molecules by forcing them through a small orifice or the bore of a small-diameter tube at high velocity.

*Hydrodynamic shearing - A technique that fragments DNA molecules by forcing them through a small orifice or the bore of a small-diameter tube at high velocity.

:Joneja, A. & Huang, X. (2009) Supplementary Material For: A device for automated hydrodynamic shearing of genomic DNA. ''BioTechniques'' '''46''': 553–556.

:Joneja, A. & Huang, X. (2009) Supplementary Material For: A device for automated hydrodynamic shearing of genomic DNA. ''BioTechniques'' '''46''': 553–556.

*Serology - A type of laboratory medicine that analyzes blood serum for signs of infection by looking at antigen-antibody interactions ''in vivo''.

*Serology - A type of laboratory medicine that analyzes blood serum for signs of infection by looking at antigen-antibody interactions ''in vivo''.

:Serology. (n.d.). Medical-Dictionary. <http://medical-dictionary.thefreedictionary.com/serology>. Accessed 10 November 2013.

:Serology. (n.d.). Medical-Dictionary. <http://medical-dictionary.thefreedictionary.com/serology>. Accessed 10 November 2013.

*The programs PEPDATA and FRAMES were used to translate the chlamydial genome.

*The programs PEPDATA and FRAMES were used to translate the chlamydial genome.

*BLASTP was used to find protein sequences in other organisms similar to the ORF sequences found in ''C. trachomatis''.

*BLASTP was used to find open reading frames in the ''C. trachomatis'' genome.

*RNAse P RNA, tRNAs, and rRNAs were identified using BLASTN.

*RNAse P RNA, tRNAs, and rRNAs were identified using BLASTN.

*BLASTP-(-mp4-option) and CLUSTALW were used to estimate the location of start codons by looking for conserved sequences.  

*BLASTP-(-mp4-option) and CLUSTALW were used to estimate the location of start codons by looking for conserved sequences.  

*The mechanisms of chromatin condensation-decondensation may be related to that in eukaryotes as evidenced by the discovery of SET and SWIB domains in the chlamydial genome previously only found in eukaryotes.

*The mechanisms of chromatin condensation-decondensation may be related to that in eukaryotes as evidenced by the discovery of SET and SWIB domains in the chlamydial genome previously only found in eukaryotes.

===[http://bacteria.ensembl.org/chlamydia_trachomatis_a_har_13/Info/Index EnsemblBacteria] Database for Chlamydia trachomatis A/HAR-13===

==[http://bacteria.ensembl.org/chlamydia_trachomatis_a_har_13/Info/Index EnsemblBacteria] Database for Chlamydia trachomatis A/HAR-13==

*NOTE: The Model Organism Database was found for the strain A/HAR-13 rather than the strain in the genome paper because the former strain is the one for which we will be analyzing the microarray data.

*NOTE: The Model Organism Database was found for the strain A/HAR-13 rather than the strain in the genome paper because the former strain is the one for which we will be analyzing the microarray data.

#The European Molecular Biology Laboratory maintains the database.

#The European Molecular Biology Laboratory maintains the database.

#The database is funded by the European Molecular Biology Laboratory, United Kingdom Biotechnology and Biosciences Research Council, The Bill and Melinda Gates Foundation, and The Wellcome Trust.

#The database is funded by the European Molecular Biology Laboratory, United Kingdom Biotechnology and Biosciences Research Council, The Bill and Melinda Gates Foundation, and The Wellcome Trust.