|
|
| | ==Week 12 Information== | | ==Week 12 Information== |
| − | Export Counting: -open Access, open file (remember to change all to all files) TIGR4 file: | + | Export Counting: -open Access, open file (remember to change all to all files) TIGR4 file:<br> |
| − | ids used: SP_#### | + | ids used: SP_####<br> |
| − | orderedlocusnames count total: 2126 entries | + | orderedlocusnames count total: 2126 entries<br> |
| − | R6 file: | + | R6 file:<br> |
| − | orderedlocusnames count total: 2115 entries | + | orderedlocusnames count total: 2115 entries<br> |
| − | ids used: SPG_#### | + | ids used: SPG_####<br> |
| − | G54 file: | + | G54 file:<br> |
| − | ids used: SPG_#### | + | ids used: SPG_####<br> |
| − | orderedlocusnames count total: 2115 entries | + | orderedlocusnames count total: 2115 entries<br> |
| − | After finding identical results for R6 and G54 files, realized that R6 file was actually for the G54 strain. Checked a few times (reopened files multiple times to confirm) | + | After finding identical results for R6 and G54 files, realized that R6 file was actually for the G54 strain. Checked a few times (reopened files multiple times to confirm)<br> |
| − | First try on Tally Engine for TIGR4: | + | First try on Tally Engine for TIGR4:<br> |
| − | XML Count: | + | XML Count:<br> |
| − | orderedlocus: 2127 | + | orderedlocus: 2127<br> |
| − | refseq: 2106 | + | refseq: 2106<br> |
| − | Database Count: | + | Database Count:<br> |
| − | ordered locus: 3831 | + | ordered locus: 3831<br> |
| − | refseq: 3403 | + | refseq: 3403<br> |
| | | | |
| − | ==Week 13== | + | =='''Week 13'''== |
| | '''Tally Engine:''' | | '''Tally Engine:''' |
| | *created new database in pgadmin III | | *created new database in pgadmin III |
| | *in sql, opened gmbuilder.sql | | *in sql, opened gmbuilder.sql |
| | *ran query, database tables were inserted | | *ran query, database tables were inserted |
Unexpected non-MediaWiki exception encountered, of type "Error"
Error: Call to undefined function each() in /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php:374
Stack trace:
#0 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(480): _DiffEngine->_diag()
#1 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(291): _DiffEngine->_compareseq()
#2 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(175): _DiffEngine->diff_local()
#3 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(653): _DiffEngine->diff()
#4 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(820): Diff->__construct()
#5 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(1240): MappedDiff->__construct()
#6 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(1458): WordLevelDiff->__construct()
#7 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(952): TableDiffFormatter->_changed()
#8 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(924): DiffFormatter->_block()
#9 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(765): DiffFormatter->format()
#10 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(655): DifferenceEngine->generateDiffBody()
#11 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(593): DifferenceEngine->getDiffBody()
#12 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(566): DifferenceEngine->getDiff()
#13 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(409): DifferenceEngine->showDiff()
#14 /apps/xmlpipedb/biodb/fall2013/includes/Article.php(725): DifferenceEngine->showDiffPage()
#15 /apps/xmlpipedb/biodb/fall2013/includes/Article.php(478): Article->showDiffPage()
#16 /apps/xmlpipedb/biodb/fall2013/includes/actions/ViewAction.php(37): Article->view()
#17 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(427): ViewAction->show()
#18 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(304): MediaWiki->performAction()
#19 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(536): MediaWiki->performRequest()
#20 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(446): MediaWiki->main()
#21 /apps/xmlpipedb/biodb/fall2013/index.php(59): MediaWiki->run()
#22 {main}