Difference between revisions of "Gleis Week 14"
From LMU BioDB 2013
(Created page with "==To Do List== *Identify new URL pattern *Fix import/export issues *Fix ID code *Tally Engine code not showing Ordered Locus") |
(→Status Report) |
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==To Do List== | ==To Do List== | ||
| − | *Identify new URL pattern | + | *Identify new URL pattern?? |
| − | * | + | *Finish export and upload microarray data |
| − | * | + | ==Status Report== |
| − | * | + | *Began new export |
| + | *Used postgres and TallyEngine to ensure proper database version | ||
| + | *Postgres identified geneID formatting and exceptions: | ||
| + | :[[Media:SQL Query ResultsandIDPattern Leishmania.PNG]] | ||
| + | *Five exceptions found- identify if relevant | ||
| + | *Export Status update @ 67% | ||
| + | *Screenshot of command prompt @ 67% of export | ||
| + | :[[Media:Leishmania GDBexport status 67percent.PNG]] | ||
| + | *Export to GenMAPP finished | ||
| + | *Screenshot of command prompt at finish | ||
| + | :[[Media:Leishmania GDBexport complete 26112013.PNG]] | ||
| + | *No errors appear to be present in export | ||
| + | *Tallyengine and postgres reported 8355 ORF IDs | ||
| + | *Access reports 8354 Ordered Locus Names | ||
| + | *attempted import of microarray data | ||
| + | *import yielded the following error: | ||
| + | :[[Media:Leishmania Data import error.PNG]] | ||
Latest revision as of 22:31, 26 November 2013
[edit] To Do List
- Identify new URL pattern??
- Finish export and upload microarray data
[edit] Status Report
- Began new export
- Used postgres and TallyEngine to ensure proper database version
- Postgres identified geneID formatting and exceptions:
- Five exceptions found- identify if relevant
- Export Status update @ 67%
- Screenshot of command prompt @ 67% of export
- Export to GenMAPP finished
- Screenshot of command prompt at finish
- No errors appear to be present in export
- Tallyengine and postgres reported 8355 ORF IDs
- Access reports 8354 Ordered Locus Names
- attempted import of microarray data
- import yielded the following error:
