Difference between revisions of "Ajvree Week 15"

Revision as of 22:39, 4 December 2013

Comparing gene id's in excel:

first search in xmlmatch:
- searched for SP_[0-9][0-9][0-9][0-9] in uniprot file
- got 2126 match results
- saved to text file
used excel to compare lists
- to convert match id's from SP_#### to SP####, used control F (search/replace function) to replace underscore with a 'no space'
link to instructions for excel match comparison found here: [[1]]
NO Matches found, all results were N/A
Excel File: ID Comparison
- Out of all 333 Gene ID's, none were found in original XML file, so those errors cannot be fixed

Visual Representation of Data Information

Compilation of Counting Totals/Visual Information

@@ Line 5: / Line 5: @@
 **searched for SP_[0-9][0-9][0-9][0-9] in uniprot file
 **got 2126 match results
-*saved to text file
+**saved to text file
-*used match in excel to compare lists
+*used excel to compare lists
+**to convert match id's from SP_#### to SP####, used control F (search/replace function) to replace underscore with a 'no space'
 *link to instructions for excel match comparison found here: [[http://xmlpipedb.sourceforge.net/wiki/index.php/Using_Microsoft_Excel_to_Compare_ID_Lists]]
 *NO Matches found, all results were N/A
@@ Line 16: / Line 17: @@
 *Finished in-class 12/3/13
 [[Image:TATK tree.png]]
+'''Compilation of Counting Totals/Visual Information'''
+*Began word document with all visual counting results in one place
+*still missing information regarding comparisons to microarray data and MOD
+*File: (uploaded as pdf since wiki refused to upload it as a .doc) [[Media:20131203 CompiledCounts tATK TIGR4 AJV.pdf|PDF]]