Difference between revisions of "Template:Leishmania Major File Updates"
From LMU BioDB 2013
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#11/5/2013 | #11/5/2013 | ||
| − | #*[[ | + | #*[[Media:A-GEOD-6855.adf_A.txt]] Array Design File |
| − | #*[[ | + | #*[[Media:E-GEOD-10407.idf_A.txt]] Investigation Description File |
| − | #*[[ | + | #*[[Media:E-GEOD-10407.processed.1_A.zip]] Processed Data |
| − | #*[[ | + | #*[[Media:E-GEOD-10407.raw.1_A.zip]] Raw Data |
| − | #*[[ | + | #*[[Media:E-GEOD-10407.sdrf_A.txt]] Sample and Data Relationship File |
#11/7/2013 | #11/7/2013 | ||
| − | #*[[ | + | #*[[Media:E-GEOD-10407.sdrf_B.txt]] Leishmania major Chips |
#*Completed Import/Export Cycle, conducted a Tally Count, opened .gdb file in Microsoft Access and compared original row counts. | #*Completed Import/Export Cycle, conducted a Tally Count, opened .gdb file in Microsoft Access and compared original row counts. | ||
#*Access was missing 2 genes for GeneID and RefSeq, and we had no GO terms in the Tally or in Access. | #*Access was missing 2 genes for GeneID and RefSeq, and we had no GO terms in the Tally or in Access. | ||
#11/11/2013 | #11/11/2013 | ||
#*[[Media:Leishmania_major_BD.pdf|Leishmania major Genome Reference Article Presentation]] | #*[[Media:Leishmania_major_BD.pdf|Leishmania major Genome Reference Article Presentation]] | ||
| + | #11/14/13 | ||
| + | #*[[Media:E-GEOD-10407.sdrf_C.txt]] Edited Sample and Data (Ordered based on species and relevant data) | ||
| + | #*[[Media:L.majorCompiledRawData.txt]] L. major raw compiled data | ||
| + | #*[[Media:L.infantumCompliedRawData(A).txt]] L. infantum raw compiled data | ||
| + | #11/19/2013: | ||
| + | #*[[Media:L.majorCompiledRawData_B.txt]] L. major raw compiled data with adjusted dye swap values | ||
| + | #*[[Media:L.infantumCompliedRawData(B).txt]] L. infantum raw compiled data with adjusted dye swap values and sample names | ||
| + | #*[[Media:L.majorCompiledRawData_C.txt]] L. major raw compiled data with adjusted dye swap values and sample names | ||
| + | #11/21/2013 | ||
| + | #*[[Media:L.infantumStats.txt]] | ||
| + | #*[[Media:L.infantumStats.xls]] | ||
| + | #*[[File:L.majorStats.xls]] | ||
| + | #*[[File:L.majorStats.txt]] | ||
| + | #*[[File:L.majorStats(A).txt]] | ||
| + | #*[[File:L.infantumStats(A).txt]] | ||
| + | #*[[File:LeishmaniaCompiledStatAnalysis.txt]] | ||
| + | #12/3/2013 | ||
| + | #*[[File:LeishmaniaCompiledStatAnalysis(A).txt]] | ||
| + | #*[[File:LeishmaniaCompiledStatAnalysis(A).EX.txt]] | ||
| + | #*[[Media:L.infantumStats_B.xls]] Fixed infantum p-value parenthesis | ||
| + | #*[[Media:LeishmaniaCompiledStatAnalysis(B).txt]] | ||
| + | #*[[Media:LeishmaniaCompiledStatAnalysisLMJFiltered.txt]] Original File That should work in GenMAPP once coding is fixed | ||
| + | #*[[Media:LeishmaniaCompiledStatAnalysisLMJFiltered(B).txt]] Quick fix file with underscores to work in GenMAPP until coding is fixed | ||
| + | #*[[Media:LeishmaniaCompiledStatAnalysisLMJFiltered(B).EX.txt]] | ||
| + | #*[[Media:LeishmaniaCompiledStatAnalysisLMJFiltered(B).gex]] | ||
| + | #*[[Media:ExceptionFileErrorID.txt]] | ||
| + | #*[[Leishmania Major Group Project Report]] | ||
| + | #*[[Media:Dist Leishmania Lena Gabe 05112013.zip]] | ||
| + | #12/5/2013 | ||
| + | #*[[Media:LeishmaniaGDB Lena Gabe 20131205.zip]] | ||
| + | #12/7/2013 | ||
| + | #*[[File:LMajorGOMapp-Criterion1-GO.txt ]] | ||
| + | #*[[File:LMajorGOMapp-Criterion0-GO.txt]] | ||
| + | #12/11/2013 | ||
| + | #*[[Media:Leishmania schema 20101022.pdf]] | ||
| + | #*[[Media:ReadMe Leishmania 20131211.pdf]] | ||
| + | #12/12/13 | ||
| + | #* [[File:LeishmaniaCompiledStatAnalysis(C).txt]] The data from L. major only for analyzing statistics | ||
Latest revision as of 03:14, 13 December 2013
- 11/5/2013
- Media:A-GEOD-6855.adf_A.txt Array Design File
- Media:E-GEOD-10407.idf_A.txt Investigation Description File
- Media:E-GEOD-10407.processed.1_A.zip Processed Data
- Media:E-GEOD-10407.raw.1_A.zip Raw Data
- Media:E-GEOD-10407.sdrf_A.txt Sample and Data Relationship File
- 11/7/2013
- Media:E-GEOD-10407.sdrf_B.txt Leishmania major Chips
- Completed Import/Export Cycle, conducted a Tally Count, opened .gdb file in Microsoft Access and compared original row counts.
- Access was missing 2 genes for GeneID and RefSeq, and we had no GO terms in the Tally or in Access.
- 11/11/2013
- 11/14/13
- Media:E-GEOD-10407.sdrf_C.txt Edited Sample and Data (Ordered based on species and relevant data)
- Media:L.majorCompiledRawData.txt L. major raw compiled data
- Media:L.infantumCompliedRawData(A).txt L. infantum raw compiled data
- 11/19/2013:
- Media:L.majorCompiledRawData_B.txt L. major raw compiled data with adjusted dye swap values
- Media:L.infantumCompliedRawData(B).txt L. infantum raw compiled data with adjusted dye swap values and sample names
- Media:L.majorCompiledRawData_C.txt L. major raw compiled data with adjusted dye swap values and sample names
- 11/21/2013
- 12/3/2013
- File:LeishmaniaCompiledStatAnalysis(A).txt
- File:LeishmaniaCompiledStatAnalysis(A).EX.txt
- Media:L.infantumStats_B.xls Fixed infantum p-value parenthesis
- Media:LeishmaniaCompiledStatAnalysis(B).txt
- Media:LeishmaniaCompiledStatAnalysisLMJFiltered.txt Original File That should work in GenMAPP once coding is fixed
- Media:LeishmaniaCompiledStatAnalysisLMJFiltered(B).txt Quick fix file with underscores to work in GenMAPP until coding is fixed
- Media:LeishmaniaCompiledStatAnalysisLMJFiltered(B).EX.txt
- Media:LeishmaniaCompiledStatAnalysisLMJFiltered(B).gex
- Media:ExceptionFileErrorID.txt
- Leishmania Major Group Project Report
- Media:Dist Leishmania Lena Gabe 05112013.zip
- 12/5/2013
- 12/7/2013
- 12/11/2013
- 12/12/13
- File:LeishmaniaCompiledStatAnalysis(C).txt The data from L. major only for analyzing statistics
