Difference between revisions of "Team Name Deliverables"
From LMU BioDB 2013
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:Gene Database Testing Report: [[Media:Match Test Sheet1.pdf]] | :Gene Database Testing Report: [[Media:Match Test Sheet1.pdf]] | ||
:Processed and analyzed DNA microarray dataset: | :Processed and analyzed DNA microarray dataset: | ||
| + | * .7 M: [[Media:SinorhizobiumMeliloti_LM_GenMapp_FinalFile.txt]] | ||
* .3 M: [[Media:Complete_processed_Data_MPM.xls|300mm NaCl XLS Version]] | * .3 M: [[Media:Complete_processed_Data_MPM.xls|300mm NaCl XLS Version]] | ||
| − | * .7 M: [[Media:SinorhizobiumMeliloti_LM_GenMapp_FinalFile. | + | :GenMAPP Expression Dataset file: |
| − | + | * .7 M: [[Media:SinorhizobiumMeliloti_LM_GenMapp_FinalFile.gex]] | |
| + | * .3 M: [[Media:T30.gex|Gene expression set for 300mm NaCl]] | ||
| − | + | :Filtered MAPPFinder Results: | |
| − | + | *.7 M files: | |
| − | :Filtered MAPPFinder Results: .7 M files: | + | **[[Media:700s1-3-t15-Decreased-Criterion-GO.xls]] |
| − | *[[Media:700s1-3-t15-Decreased-Criterion-GO.xls]] | + | **[[Media:700s1-3-t15-Increased-Criterion-GO.xls]] |
| − | *[[Media:700s1-3-t15-Increased-Criterion-GO.xls]] | + | *.3 M files: |
| − | + | **[[Media:MAPPFinder_results_T15-Criterion_Increased-GO.txt|Increased expression at T15 300mm NaCl]] | |
| − | *[[Media:MAPPFinder_results_T15-Criterion_Increased-GO.txt|Increased expression at T15 300mm NaCl]] | + | **[[Media:MAPPFinder_results_T15-Criterion_Decreased-GO.txt|Decreased expression at T15 300mm NaCl]] |
| − | + | **[[Media:T30_increased-Criterion0-GO.txt|Increased expression at t30 300mm NaCl]] | |
| − | *[[Media:MAPPFinder_results_T15-Criterion_Decreased-GO.txt|Decreased expression at T15 300mm NaCl]] | + | **[[Media:T30_MAPP_results-Criterion_Decreased-GO.txt|Decreased expression at t30 300mm NaCl]] |
| − | + | **[[Media:MAPPFinder_t60-Criterion_Increased-GO.txt|Increased expression at t60 300mm NaCl]] | |
| − | *[[Media:T30_increased-Criterion0-GO.txt|Increased expression at t30 300mm NaCl]] | + | **[[Media:MAPPFinder_t60-Criterion_Decreasaed-GO.txt|Decreased expression at t60 300mm NaCl]] |
| − | + | **[[Media:300N_T240_MAPPFINDER-Criterion_Increased-GO.txt|Increased expression t240 300mmNaCl]] | |
| − | *[[Media:T30_MAPP_results-Criterion_Decreased-GO.txt|Decreased expression at t30 300mm NaCl]] | + | **[[Media:300N_T240_MAPPFINDER-Criterion_Decreased-GO.txt|decreased expression at t240 300mmNaCl]] |
| − | + | ||
| − | *[[Media:MAPPFinder_t60-Criterion_Increased-GO.txt|Increased expression at t60 300mm NaCl]] | + | |
| − | + | ||
| − | *[[Media:MAPPFinder_t60-Criterion_Decreasaed-GO.txt|Decreased expression at t60 300mm NaCl]] | + | |
| − | *[[Media:300N_T240_MAPPFINDER-Criterion_Increased-GO.txt|Increased expression t240 300mmNaCl]] | + | |
| − | *[[Media:300N_T240_MAPPFINDER-Criterion_Decreased-GO.txt|decreased expression at t240 300mmNaCl]] | + | |
:Sample MAPP file of a relevant biological pathway for your species: | :Sample MAPP file of a relevant biological pathway for your species: | ||
| + | * .7 M files: [[Media:regulation of transcription, DNA-dependent.mapp]] | ||
| + | * .3 M files: [[Media:Structural_constituent_of_Ribosome.mapp| Structural constituents of ribosome 300mm NaCl]] | ||
| − | + | :Group Report: [[Media: BiologicalDatabasesFinalReport.pdf | S. meliloti Final Report]] | |
| − | + | ||
| − | + | ||
| − | + | ||
| − | :Group Report: [[Media: | + | |
:PowerPoint presentation: [[Media:Sinorhizobium_Meliloti_(Strain_1021)_FINAL_PRESENTATION.pdf | Sinorhizobium meliloti (Strain_1021) FINAL_PRESENTATION (PDF)]] | :PowerPoint presentation: [[Media:Sinorhizobium_Meliloti_(Strain_1021)_FINAL_PRESENTATION.pdf | Sinorhizobium meliloti (Strain_1021) FINAL_PRESENTATION (PDF)]] | ||
*Note: Wiki page is not accepting our converted .ppt format. The PDF version should suffice. | *Note: Wiki page is not accepting our converted .ppt format. The PDF version should suffice. | ||
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*[[https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/Individual_Assessment_and_Reflection Mitchell Petredis deliverables]] | *[[https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/Individual_Assessment_and_Reflection Mitchell Petredis deliverables]] | ||
*[[Stephen Louie Deliverables]] | *[[Stephen Louie Deliverables]] | ||
| + | *[[Laurmagee: Individual Assessment]] | ||
Latest revision as of 00:43, 14 December 2013
[edit] Group
- GenMAPP Gene Database:Media:Sinorhizobium_meliloti_1021_mpetredi_2013123-2.gdb
- ReadMe file: ReadME_S.meliloti
- Gene Database Schema diagram: S.meliloti_schema_20131205.pdf
- Gene Database Testing Report: Media:Match Test Sheet1.pdf
- Processed and analyzed DNA microarray dataset:
- GenMAPP Expression Dataset file:
- Filtered MAPPFinder Results:
- .7 M files:
- .3 M files:
- Increased expression at T15 300mm NaCl
- Decreased expression at T15 300mm NaCl
- Increased expression at t30 300mm NaCl
- Decreased expression at t30 300mm NaCl
- Increased expression at t60 300mm NaCl
- Decreased expression at t60 300mm NaCl
- Increased expression t240 300mmNaCl
- decreased expression at t240 300mmNaCl
- Sample MAPP file of a relevant biological pathway for your species:
- .7 M files: Media:regulation of transcription, DNA-dependent.mapp
- .3 M files: Structural constituents of ribosome 300mm NaCl
- Group Report: S. meliloti Final Report
- PowerPoint presentation: Sinorhizobium meliloti (Strain_1021) FINAL_PRESENTATION (PDF)
- Note: Wiki page is not accepting our converted .ppt format. The PDF version should suffice.
