|
|
| #Locate the navigation toolbar, which contains links to different sections in a light blue box with rounded corners that spans the page horizontally. | | #Locate the navigation toolbar, which contains links to different sections in a light blue box with rounded corners that spans the page horizontally. |
| #Click on the link '''Entry information''' to jump to that section. | | #Click on the link '''Entry information''' to jump to that section. |
− | #*This section contains information regarding Entry name (for quick identification), Accession Number (unique identifier for the protein), Entry history, Entry status, and Annotation program (these headers appear in a vertical column to the left). | + | #*This section contains information regarding Entry name (for quick identification), Accession Number (unique identifier for the protein), Entry history, Entry status, and Annotation program. |
| #In the row of this section containing accession number information, click on the gray icon with two arrows pointing in opposite directions to expand the list of secondary accession numbers for the protein. | | #In the row of this section containing accession number information, click on the gray icon with two arrows pointing in opposite directions to expand the list of secondary accession numbers for the protein. |
| #Scroll back to the top of the page. | | #Scroll back to the top of the page. |
|
|
| #*You should be redirected to the page that you were already browsing through. | | #*You should be redirected to the page that you were already browsing through. |
| #Click on the link '''Names''' in the navigation tool bar. This should take you to a section called "Names and origin". | | #Click on the link '''Names''' in the navigation tool bar. This should take you to a section called "Names and origin". |
− | #*This section should contain information regarding Protein names, Gene names, Organism, Taxonomic identifier, and Taxonomic lineage. (these headers appear in a vertical column to the left). | + | #*This section should contain information regarding Protein names, Gene names, Organism, Taxonomic identifier, and Taxonomic lineage. |
| #Click on the Enzyme Commission number, which is listed after "EC=" in the row designed "Protein names". | | #Click on the Enzyme Commission number, which is listed after "EC=" in the row designed "Protein names". |
| #*This will take you to a page in the database ExPASy which gives information regarding what is the biochemical function of human EGFR protein. | | #*This will take you to a page in the database ExPASy which gives information regarding what is the biochemical function of human EGFR protein. |
|
|
| #Click on the link '''Sequences''' in the navigation tool bar. This link takes you to a section that displays the amino acid sequence of the protein of interest as well as its length and mass. | | #Click on the link '''Sequences''' in the navigation tool bar. This link takes you to a section that displays the amino acid sequence of the protein of interest as well as its length and mass. |
| #*If the protein of interest has multiple isoforms, such as the Human EGFR Protein, this section will show the aforementioned information for each of the isoforms. | | #*If the protein of interest has multiple isoforms, such as the Human EGFR Protein, this section will show the aforementioned information for each of the isoforms. |
| + | #Scroll back up to the top of the page. |
| + | #Find the five yellow buttons on the right side of the page (toward the top of the page). Clicking on any one of these five buttons allows you to see the data presented on the page in one of five different formats: TXT, XML, RDF/XML, GFF, and FASTA. |
| + | #*Complete the following steps to view the RDF/XML file: |
| + | ##Click on the button on which is written RDF/XML, which will download the file onto your computer. |
| + | ##Go to the folder in which the file was saved. |
| + | ##Right click on the file and open its Properties. |
| + | ##Change the default program that opens this file to Internet Explorer. Save the changes. |
| + | ##Double-click on the file to open it within the web browser. |
| | | |
| ===Summary of Information on the Human EGFR Protein=== | | ===Summary of Information on the Human EGFR Protein=== |
| | | |
Unexpected non-MediaWiki exception encountered, of type "Error"
Error: Call to undefined function each() in /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php:374
Stack trace:
#0 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(480): _DiffEngine->_diag()
#1 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(291): _DiffEngine->_compareseq()
#2 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(175): _DiffEngine->diff_local()
#3 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(653): _DiffEngine->diff()
#4 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(820): Diff->__construct()
#5 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(1240): MappedDiff->__construct()
#6 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(1458): WordLevelDiff->__construct()
#7 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(952): TableDiffFormatter->_changed()
#8 /apps/xmlpipedb/biodb/fall2013/includes/diff/DairikiDiff.php(924): DiffFormatter->_block()
#9 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(765): DiffFormatter->format()
#10 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(655): DifferenceEngine->generateDiffBody()
#11 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(593): DifferenceEngine->getDiffBody()
#12 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(566): DifferenceEngine->getDiff()
#13 /apps/xmlpipedb/biodb/fall2013/includes/diff/DifferenceEngine.php(409): DifferenceEngine->showDiff()
#14 /apps/xmlpipedb/biodb/fall2013/includes/Article.php(725): DifferenceEngine->showDiffPage()
#15 /apps/xmlpipedb/biodb/fall2013/includes/Article.php(478): Article->showDiffPage()
#16 /apps/xmlpipedb/biodb/fall2013/includes/actions/ViewAction.php(37): Article->view()
#17 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(427): ViewAction->show()
#18 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(304): MediaWiki->performAction()
#19 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(536): MediaWiki->performRequest()
#20 /apps/xmlpipedb/biodb/fall2013/includes/Wiki.php(446): MediaWiki->main()
#21 /apps/xmlpipedb/biodb/fall2013/index.php(59): MediaWiki->run()
#22 {main}