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| | ==[[user:mpetredi|'''Mitchell Petredis''']]== | | ==[[user:mpetredi|'''Mitchell Petredis''']]== |
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| − | ===UniProt XML===
| + | [[[[Team Name]]]] |
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| − | #Go to [[http://www.uniprot.org/taxonomy/complete-proteomes UniProt Complete Proteomes]]
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| − | #Choose a topic from the "Complete proteomes" list
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| − | #*I picked [[http://www.uniprot.org/taxonomy/?query=complete:yes%20ancestor:2 Bacteria]]
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| − | #Pick a specimen from the list of results and click on "Complete proteome set" under its link.
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| − | #*For this exercise, pick [[http://www.uniprot.org/uniprot/?query=organism:243277+keyword:1185 Vibrio cholerae serotype O1 (strain 39315 / El Tor Inaba N16961)]]
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| − | #Once on your specimen page, click on the yellow/orange box in the upper right hand corner called [[http://www.uniprot.org/uniprot/?query=organism%3a243277+keyword%3a1185&format=* Download]] to choose a filetype
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| − | #*Prior to selecting a file type, make sure [[http://www.uniprot.org/uniprot/?query=organism%3a243277+keyword%3a1185&format=*&compress=yes compressed]] results are enabled by clicking on the link.
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| − | #*select [[http://www.uniprot.org/uniprot/?query=organism%3a243277+keyword%3a1185&compress=yes&format=xml XML]]
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| − | #**Extract the .gz file by right-clicking on the file and scrolling to 7-zip/Extract here
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| − | ===GOA===
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| − | #Go to [[http://www.ebi.ac.uk/GOA/downloads UniProt-GOA Downloads]]
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| − | #*Current/previous UniProt-GOA files are located [[ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/ here]]. NOTE: Google Chrome can't find the link, and redirects to [[http://www.ebi.ac.uk/ European Bionformatics Institute]] instead.
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