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| | *Biovar - A strain differentiated from other strains by biochemical or other non-serological means. | | *Biovar - A strain differentiated from other strains by biochemical or other non-serological means. |
| | :Abedon, S. T. (1998) Supplemental Lecture (98/04/14 update). <http://www.mansfield.ohio-state.edu/~sabedon/biol3010.htm>. Accessed 10 November 2013. | | :Abedon, S. T. (1998) Supplemental Lecture (98/04/14 update). <http://www.mansfield.ohio-state.edu/~sabedon/biol3010.htm>. Accessed 10 November 2013. |
| | + | *Clusters of orthologous groups (COGs) - A group of at least three proteins that have the same evolutionary origin. |
| | + | :Koonin, E.V. (2013) The Clusters of Orthologous Groups (COGs) Database: Phylogenetic Classification of Proteins. from Complete Genomes. In J. McEntyre & J. Ostell (Eds). ''The NCBI Handbook''. Retrieved from http://www.ncbi.nlm.nih.gov/books/NBK21090/. Accessed 11 November 2013. |
| | *Contig - Copies of pieces of DNA that represent the overlapping regions of a chromosome. | | *Contig - Copies of pieces of DNA that represent the overlapping regions of a chromosome. |
| | :U.S. Department of Energy Human Genome Project (2013) The Human Genome Project Information Archive 1990-2003. <http://web.ornl.gov/sci/techresources/Human_Genome/glossary.shtml>. Accessed 10 November 2013. | | :U.S. Department of Energy Human Genome Project (2013) The Human Genome Project Information Archive 1990-2003. <http://web.ornl.gov/sci/techresources/Human_Genome/glossary.shtml>. Accessed 10 November 2013. |
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| | *Hydrodynamic shearing - A technique that fragments DNA molecules by forcing them through a small orifice or the bore of a small-diameter tube at high velocity. | | *Hydrodynamic shearing - A technique that fragments DNA molecules by forcing them through a small orifice or the bore of a small-diameter tube at high velocity. |
| | :Joneja, A. & Huang, X. (2009) Supplementary Material For: A device for automated hydrodynamic shearing of genomic DNA. ''BioTechniques'' '''46''': 553–556. | | :Joneja, A. & Huang, X. (2009) Supplementary Material For: A device for automated hydrodynamic shearing of genomic DNA. ''BioTechniques'' '''46''': 553–556. |
| | + | *Paralog - Genes that are homologous and are a result of gene duplication. |
| | + | :Paralogy. (n.d.) Biology Online. <http://www.biology-online.org/dictionary/Paralogy>. Accessed 11 November 2013. |
| | + | *Pathogenicity island - Genetic element within an organism's genome that is responsible for the ability of the organism to cause disease. |
| | + | :Pathogenicity island. (n.d.) MedicineNet.com. <http://www.medterms.com/script/main/art.asp?articlekey=20705>. Accessed 11 November 2013. |
| | *Serology - A type of laboratory medicine that analyzes blood serum for signs of infection by looking at antigen-antibody interactions ''in vivo''. | | *Serology - A type of laboratory medicine that analyzes blood serum for signs of infection by looking at antigen-antibody interactions ''in vivo''. |
| | :Serology. (n.d.). Medical-Dictionary. <http://medical-dictionary.thefreedictionary.com/serology>. Accessed 10 November 2013. | | :Serology. (n.d.). Medical-Dictionary. <http://medical-dictionary.thefreedictionary.com/serology>. Accessed 10 November 2013. |
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| | *The programs PEPDATA and FRAMES were used to translate the chlamydial genome. | | *The programs PEPDATA and FRAMES were used to translate the chlamydial genome. |
| − | *BLASTP was used to find protein sequences in other organisms similar to the ORF sequences found in ''C. trachomatis''. | + | *BLASTP was used to find open reading frames in the ''C. trachomatis'' genome. |
| | *RNAse P RNA, tRNAs, and rRNAs were identified using BLASTN. | | *RNAse P RNA, tRNAs, and rRNAs were identified using BLASTN. |
| | *BLASTP-(-mp4-option) and CLUSTALW were used to estimate the location of start codons by looking for conserved sequences. | | *BLASTP-(-mp4-option) and CLUSTALW were used to estimate the location of start codons by looking for conserved sequences. |
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| | *The mechanisms of chromatin condensation-decondensation may be related to that in eukaryotes as evidenced by the discovery of SET and SWIB domains in the chlamydial genome previously only found in eukaryotes. | | *The mechanisms of chromatin condensation-decondensation may be related to that in eukaryotes as evidenced by the discovery of SET and SWIB domains in the chlamydial genome previously only found in eukaryotes. |
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