Difference between revisions of "Data Information"
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This excerpt from [http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-26976/?query=streptococcus+pneumoniae Array Express] was the basis for determining which biological replicates were related to which technical replicates as seen in the data | This excerpt from [http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-26976/?query=streptococcus+pneumoniae Array Express] was the basis for determining which biological replicates were related to which technical replicates as seen in the data | ||
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| + | [[User:Ajvree|Ajvree]] ([[User talk:Ajvree|talk]]) 10:20, 3 December 2013 (PST) | ||
50571 error messages replaced with single space character. | 50571 error messages replaced with single space character. | ||
Latest revision as of 18:20, 3 December 2013
[edit] corresponding data files to ID and sample excel file
- GSM664117_14090187_control_Cy3_48_hr_Cy5 = control_Cy3_48hr_Cy5_1
- GSM664117_14090181_control_Cy3_48_hr_Cy5 = control_Cy3_48hr_Cy5_2
- GSM664116_14090193_control_Cy3_24_hr_Cy5 = control_Cy3_24hr_Cy5_1
- GSM664116_14090175_24_hr_Cy3_control_Cy5 = 24hr_Cy3_control_Cy5_1
- GSM664116_14090170_control_Cy3_24_hr_Cy5 = control_Cy3_24hr_Cy5_2
- GSM664116_14087687_24_hr_Cy3_control_Cy5 = 24hr_Cy3_control_Cy5_2
- GSM664115_14090191_control_Cy3_12_hr_Cy5 = control_Cy3_12hr_Cy5_1
- GSM664115_14090185_control_Cy3_12_hr_Cy5 = control_Cy3_12hr_Cy5_2
- GSM664115_14090180_12_hr_Cy3_control_Cy5 = 12hr_Cy3_control_Cy5_1
- GSM664115_14090174_12_hr_Cy3_control_Cy5 = 12hr_Cy3_control_Cy5_2
- GSM664115_14090168_12_hr_Cy3_control_Cy5 = 12hr_Cy3_control_Cy5_3
- GSM664115_14087688_control_Cy3_12_hr_Cy5 = control_Cy3_12hr_Cy5_3
- GSM664114_14090192_control_Cy3_4_hr_Cy5 = control_Cy3_4hr_Cy5_1
- GSM664114_14090190_4_hr_Cy3_control_Cy5 = 4hr_Cy3_control_Cy5_1
- GSM664114_14090188_4_hr_Cy3_control_Cy5 = 4hr_Cy3_control_Cy5_2
- GSM664114_14090176_4_hr_Cy3_control_Cy5 = 4hr_Cy3_control_Cy5_3
- GSM664114_14090169_control_Cy3_4_hr_Cy5 = control_Cy3_4hr_Cy5_2
- GSM664114_14090167_control_Cy3_4_hr_Cy5 = control_Cy3_4hr_Cy5_3
all information data fold changes
"Pneumococcal biofilms compared to planktonic control at 4, 12, 24, 48 hours. 3 biological replicates each of 4 and 12 hour time points, and 2 biological replicates each of 24 and 48 hour time points. Flip dye (technical replicates) performed for 4, 12, and 24 hour time points; no technical replicate performed for 48 hour time point due to limiting material. Ratios were determined by averaging across technical and biological replicates. The following hybridizations made up each biological replicate: 14090167.tav.annot and 14090190.tav.annot (4hr biol rep 1); 14090169.tav.annot and 14090176.tav.annot (4hr biol rep 2); 14090192.tav.annot and 14090188.tav.annot (4hr biol rep 3); 14087688.tav.annot and 14090180.tav.annot (12hr biol rep 1); 14090185.tav.annot and 14090168.tav.annot (12hr biol rep 2); 14090191.tav.annot and 14090174.tav.annot (12hr biol rep 3); 14090170.tav.annot and 14090175.tav.annot (24hr biol rep 2); 14090193.tav.annot and 14087687.tav.annot (24hr biol rep 3); 14090181.tav.annot (48hr biol rep 1); 14090187.tav.annot (48hr biol rep 2)"
This excerpt from Array Express was the basis for determining which biological replicates were related to which technical replicates as seen in the data
Tree Representation:
Ajvree (talk) 10:20, 3 December 2013 (PST)
50571 error messages replaced with single space character.
