Difference between revisions of "Team H(oo)KD Final Project Deliverables"
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*Gene database for ''Chlamydia trachomatis'' A/HAR-13 (.gdb): [[Media:Ct-Std External 20131121.gdb|Ct-Std_External_20131121.gdb]] | *Gene database for ''Chlamydia trachomatis'' A/HAR-13 (.gdb): [[Media:Ct-Std External 20131121.gdb|Ct-Std_External_20131121.gdb]] | ||
| − | *ReadMe file including the gene database schema: | + | *ReadMe file including the gene database schema:[[Media:ReadMe Ct-Std External 20131122.pdf|ReadMe_Ct-Std_External_20131122.pdf]] |
*Gene database testing report: [[Media:Ct External 20131121 Gene Database Testing Report.pdf|Ct_External_20131121_Gene_Database_Testing_Report.pdf]] | *Gene database testing report: [[Media:Ct External 20131121 Gene Database Testing Report.pdf|Ct_External_20131121_Gene_Database_Testing_Report.pdf]] | ||
| − | *Processed and analyzed DNA microarray dataset (.xls): | + | *Processed and analyzed DNA microarray dataset (.xls):[[Media:Final Excel Sheet Used for Project.xls | processed and analyzed DNA microarray dataset]] |
*GenMAPP Expression Dataset file (.gex): | *GenMAPP Expression Dataset file (.gex): | ||
| − | :*For data collected in absence of rifampicin: [[Media: For GenMAPP Chlamydia V4 20131205 KS.gex| | + | :*For data collected in absence of rifampicin: [[Media: For GenMAPP Chlamydia V4 20131205 KS.gex|For_GenMAPP_Absence_of_Rifampicin.gex]] |
:*For data collected in presence of rifampicin: [[Media:For GenMAPP Chlamydia V4 20131212 KS Presence of Rifampicin.gex|For_GenMAPP Chlamydia_V4_20131212_KS_Presence_of_Rifampicin.gex]] | :*For data collected in presence of rifampicin: [[Media:For GenMAPP Chlamydia V4 20131212 KS Presence of Rifampicin.gex|For_GenMAPP Chlamydia_V4_20131212_KS_Presence_of_Rifampicin.gex]] | ||
*Filtered MAPPFinder Results (.xls): | *Filtered MAPPFinder Results (.xls): | ||
| − | *Sample MAPP file of a relevant biological pathway for your species (.mapp): | + | *[[Media: EB to RB No Rif 20131207 KS DW-Criterion0-GO.xls|EB to RB No Rif Increased]] |
| − | :*Picture of the MAPP (.jpeg): | + | *[[Media: EB to RB No Rif 20131207 KS DW-Criterion1-GO.xls|EB to RB No Rif decreased]] |
| − | *Group Report (.pdf): | + | *[[Media: MAPPFinder Results EB to RB Rifampicin 20131212-Criterion0-GO (1).xls | EB to RB Rif Increased]] |
| − | *PowerPoint presentation (given on Thursday, December 12): | + | *[[Media:MAPPFinder_Results_EB_to_RB_Rifampicin_20131212-Criterion1-GO_(1).xls|EB to RB Rif decreased]] |
| + | *Sample MAPP file of a relevant biological pathway for your species (.mapp):[[Media:EBtoRB_Rifampicin_Cellular_Carbohydrate_Metabolic_Process.mapp]] | ||
| + | :*Picture of the MAPP (.jpeg):[[Media:EBtoRB Rifampicin Cellular Carbohydrate Metabolic Process.jpg]] | ||
| + | *Group Report (.pdf): [[Media:Report for Final Project HDDWKS 20131213.pdf|Report_for_Final_Project_HDDWKS_20131213.pdf]] | ||
| + | *PowerPoint presentation (given on Thursday, December 12): [[Media:Transcriptional_Analysis_of_the_Developmental_Stages_of_Chlamydia_trachomatis_A_HAR-13_HDKSDW_20131212.pdf|Transcriptional_Analysis_of_the_Developmental_Stages_of_Chlamydia_trachomatis_A_HAR-13_HDKSDW_20131212.pdf]] | ||
Latest revision as of 22:45, 15 December 2013
| Project Manager/Coder: Katrina Sherbina | Quality Assurance: Hilda Delgadillo | GenMAPP User: Dillon Williams |
| Project Guidelines: | Gene Database Project | Report Guidelines | |
| Team Journal Assignments | Week 12 Status Report | Week 13 Status Report | Week 15 Status Report |
| Individual Status Reports: | HDelgadi Project Notebook | dwilliams Project Notebook | Ksherbina Project Notebook |
| Useful Links: | Class Page | Team Home Page |
| Final Product | Project Deliverables |
[edit] Deliverables
- Gene database for Chlamydia trachomatis A/HAR-13 (.gdb): Ct-Std_External_20131121.gdb
- ReadMe file including the gene database schema:ReadMe_Ct-Std_External_20131122.pdf
- Gene database testing report: Ct_External_20131121_Gene_Database_Testing_Report.pdf
- Processed and analyzed DNA microarray dataset (.xls): processed and analyzed DNA microarray dataset
- GenMAPP Expression Dataset file (.gex):
- For data collected in absence of rifampicin: For_GenMAPP_Absence_of_Rifampicin.gex
- For data collected in presence of rifampicin: For_GenMAPP Chlamydia_V4_20131212_KS_Presence_of_Rifampicin.gex
- Filtered MAPPFinder Results (.xls):
- EB to RB No Rif Increased
- EB to RB No Rif decreased
- EB to RB Rif Increased
- EB to RB Rif decreased
- Sample MAPP file of a relevant biological pathway for your species (.mapp):Media:EBtoRB_Rifampicin_Cellular_Carbohydrate_Metabolic_Process.mapp
- Picture of the MAPP (.jpeg):Media:EBtoRB Rifampicin Cellular Carbohydrate Metabolic Process.jpg
- Group Report (.pdf): Report_for_Final_Project_HDDWKS_20131213.pdf
- PowerPoint presentation (given on Thursday, December 12): Transcriptional_Analysis_of_the_Developmental_Stages_of_Chlamydia_trachomatis_A_HAR-13_HDKSDW_20131212.pdf
