Difference between revisions of "Kmeilak Week 3"
From LMU BioDB 2013
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*The first unique match ("james k.d.") appears 8238 times and the second unique match ("james a.a.") appears 1 time | *The first unique match ("james k.d.") appears 8238 times and the second unique match ("james a.a.") appears 1 time | ||
*The pattern \"James.*\" represents | *The pattern \"James.*\" represents | ||
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| + | 3. ATG Results | ||
| + | |||
| + | *The answer Match gave me was that ATG appeared 830101 times | ||
| + | *grep/wc said that ATG appeared 502410 times | ||
| + | *Yes, these responses do make sense. Match looks only for the pattern ATG, but grep/wc searches for the number of lines of code where the sequence appears, which means any lines with multiple appearances of ATG are counted as a single result. | ||
Revision as of 03:47, 13 September 2013
Week 2
Where's your stuff?
Link to html: [file:///C:/Users/Kevin/Desktop/Week%203%20homework.html link to Kevin's html]
XMLPipeDB Match Practice
1. The Match command that tallies the occurrences of the pattern GO:000916. in the 493.P_falciparum.xml file is
- There are 2 unique matches
- the first unique match (go:0009165) appears twice, and the second unique match (go:0009168) appears once
- The pattern GO:000916. represents
2. The Match command that tallies the occurrences of the pattern \"James.*\" in the 493.P_falciparum.xml file is
- There are 2 unique matches
- The first unique match ("james k.d.") appears 8238 times and the second unique match ("james a.a.") appears 1 time
- The pattern \"James.*\" represents
3. ATG Results
- The answer Match gave me was that ATG appeared 830101 times
- grep/wc said that ATG appeared 502410 times
- Yes, these responses do make sense. Match looks only for the pattern ATG, but grep/wc searches for the number of lines of code where the sequence appears, which means any lines with multiple appearances of ATG are counted as a single result.
