Difference between revisions of "Taur.vil Week 3"

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[[Week_3|Week 3 Individual Journal]]
 
[[Week_3|Week 3 Individual Journal]]
  
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==Week 2 Correction==
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:None were needed
  
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==Genetic Code by Computer==
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===Complement of a strand===
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cat prokaryote.txt | sed "y/atcg/tagc/"
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===Translating the Genetic Code===
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+1 Frame
 +
cat prokaryote.txt | sed "s/t/u/g" | sed "s/.../& /" | sed -f genetic-code.sed
 +
Produces
 +
S T I F Q - V R W P K K T I L N L K R C L I P C S A Y N P A A S S A G G I L
 +
+2 Frame
 +
cat prokaryote.txt | sed "s/t/u/g" | sed "s/^.//g" | sed "s/.../& /g" | sed -f genetic-code.sed
 +
Produces
 +
L L Y F N R Y D G Q R R Q Y - T - N V A - Y H V P R I T Q P P V P L A A F -
 +
+3 Frame
 +
cat prokaryote.txt | sed "s/t/u/g" | sed "s/^..//g" | sed "s/.../& /g" | sed -f genetic-code.sed
 +
Produces
 +
Y Y I S I G T M A K E D N I E L E T L P N T M F R V - P S R Q F R W R H F N
  
 
{{Taur.vil}}
 
{{Taur.vil}}

Revision as of 04:49, 13 September 2013

Week 3 Individual Journal

Contents

Week 2 Correction

None were needed

Genetic Code by Computer

Complement of a strand

cat prokaryote.txt | sed "y/atcg/tagc/"

Translating the Genetic Code

+1 Frame

cat prokaryote.txt | sed "s/t/u/g" | sed "s/.../& /" | sed -f genetic-code.sed

Produces

S T I F Q - V R W P K K T I L N L K R C L I P C S A Y N P A A S S A G G I L

+2 Frame

cat prokaryote.txt | sed "s/t/u/g" | sed "s/^.//g" | sed "s/.../& /g" | sed -f genetic-code.sed

Produces

L L Y F N R Y D G Q R R Q Y - T - N V A - Y H V P R I T Q P P V P L A A F -

+3 Frame

cat prokaryote.txt | sed "s/t/u/g" | sed "s/^..//g" | sed "s/.../& /g" | sed -f genetic-code.sed

Produces

Y Y I S I G T M A K E D N I E L E T L P N T M F R V - P S R Q F R W R H F N

By Tauras Vilgalys

As part of Biological Databases


Please Remember the Harassing of Deities is Strictly Prohibited

Never Forget Samson

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