Difference between revisions of "Taur.vil Week 3"
From LMU BioDB 2013
(Positive Frames) |
(→Translating the Genetic Code: - frames) |
||
| Line 8: | Line 8: | ||
cat prokaryote.txt | sed "y/atcg/tagc/" | cat prokaryote.txt | sed "y/atcg/tagc/" | ||
===Translating the Genetic Code=== | ===Translating the Genetic Code=== | ||
| − | +1 Frame | + | '''+1 Frame''' |
cat prokaryote.txt | sed "s/t/u/g" | sed "s/.../& /" | sed -f genetic-code.sed | cat prokaryote.txt | sed "s/t/u/g" | sed "s/.../& /" | sed -f genetic-code.sed | ||
Produces | Produces | ||
S T I F Q - V R W P K K T I L N L K R C L I P C S A Y N P A A S S A G G I L | S T I F Q - V R W P K K T I L N L K R C L I P C S A Y N P A A S S A G G I L | ||
| − | +2 Frame | + | '''+2 Frame''' |
cat prokaryote.txt | sed "s/t/u/g" | sed "s/^.//g" | sed "s/.../& /g" | sed -f genetic-code.sed | cat prokaryote.txt | sed "s/t/u/g" | sed "s/^.//g" | sed "s/.../& /g" | sed -f genetic-code.sed | ||
Produces | Produces | ||
L L Y F N R Y D G Q R R Q Y - T - N V A - Y H V P R I T Q P P V P L A A F - | L L Y F N R Y D G Q R R Q Y - T - N V A - Y H V P R I T Q P P V P L A A F - | ||
| − | +3 Frame | + | '''+3 Frame''' |
cat prokaryote.txt | sed "s/t/u/g" | sed "s/^..//g" | sed "s/.../& /g" | sed -f genetic-code.sed | cat prokaryote.txt | sed "s/t/u/g" | sed "s/^..//g" | sed "s/.../& /g" | sed -f genetic-code.sed | ||
Produces | Produces | ||
Y Y I S I G T M A K E D N I E L E T L P N T M F R V - P S R Q F R W R H F N | Y Y I S I G T M A K E D N I E L E T L P N T M F R V - P S R Q F R W R H F N | ||
| + | |||
| + | '''-1 Frame''' | ||
| + | cat prokaryote.txt | rev| sed "y/atcg/uagc/" | sed "s/.../& /g" | sed -f genetic-code.sed | ||
| + | Produces | ||
| + | V K M P P A E L A A G L Y A E H G I R Q R F K F N I V F F G H R T Y - N I V | ||
| + | '''-2 Frame''' | ||
| + | cat prokaryote.txt | rev| sed "y/atcg/uagc/" | sed "s/^.//g" | sed "s/.../& /g" | sed -f genetic-code.sed | ||
| + | Produces | ||
| + | L K C R Q R N W R L G Y T R N M V L G N V S S S I L S S L A I V P I E I - - | ||
| + | '''-3 Frame''' | ||
| + | cat prokaryote.txt | rev| sed "y/atcg/uagc/" | sed "s/^.//g" | sed "s/.../& /g" | sed -f genetic-code.sed | ||
| + | Produces | ||
| + | - N A A S G T G G W V I R G T W Y - A T F Q V Q Y C L L W P S Y L L K Y S R | ||
{{Taur.vil}} | {{Taur.vil}} | ||
Revision as of 04:56, 13 September 2013
Contents |
Week 2 Correction
- None were needed
Genetic Code by Computer
Complement of a strand
cat prokaryote.txt | sed "y/atcg/tagc/"
Translating the Genetic Code
+1 Frame
cat prokaryote.txt | sed "s/t/u/g" | sed "s/.../& /" | sed -f genetic-code.sed
Produces
S T I F Q - V R W P K K T I L N L K R C L I P C S A Y N P A A S S A G G I L
+2 Frame
cat prokaryote.txt | sed "s/t/u/g" | sed "s/^.//g" | sed "s/.../& /g" | sed -f genetic-code.sed
Produces
L L Y F N R Y D G Q R R Q Y - T - N V A - Y H V P R I T Q P P V P L A A F -
+3 Frame
cat prokaryote.txt | sed "s/t/u/g" | sed "s/^..//g" | sed "s/.../& /g" | sed -f genetic-code.sed
Produces
Y Y I S I G T M A K E D N I E L E T L P N T M F R V - P S R Q F R W R H F N
-1 Frame
cat prokaryote.txt | rev| sed "y/atcg/uagc/" | sed "s/.../& /g" | sed -f genetic-code.sed
Produces
V K M P P A E L A A G L Y A E H G I R Q R F K F N I V F F G H R T Y - N I V
-2 Frame
cat prokaryote.txt | rev| sed "y/atcg/uagc/" | sed "s/^.//g" | sed "s/.../& /g" | sed -f genetic-code.sed
Produces
L K C R Q R N W R L G Y T R N M V L G N V S S S I L S S L A I V P I E I - -
-3 Frame
cat prokaryote.txt | rev| sed "y/atcg/uagc/" | sed "s/^.//g" | sed "s/.../& /g" | sed -f genetic-code.sed
Produces
- N A A S G T G G W V I R G T W Y - A T F Q V Q Y C L L W P S Y L L K Y S R
- As part of Biological Databases
Please Remember the Harassing of Deities is Strictly Prohibited
Never Forget Samson
