Difference between revisions of "Vkuehn Week 3"
From LMU BioDB 2013
(first reading frame added) |
(Added reading frames) |
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cat prokaryote.txt | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | cat prokaryote.txt | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
+2 Reading Frame: | +2 Reading Frame: | ||
| + | cat prokaryote.txt | sed "s/^./ /g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
| + | +3 Reading Frame: | ||
| + | cat prokaryote.txt | sed "s/^../ /g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed | ||
| + | ===Reverse Reading Frames:=== | ||
| + | -1 Reading Frame: | ||
| + | |||
| + | -2 Reading Frame: | ||
| + | |||
| + | -3 REading Frame: | ||
[[user: Vkuehn|Viktoria Kuehn]] | [[user: Vkuehn|Viktoria Kuehn]] | ||
Revision as of 18:22, 15 September 2013
Contents |
Individual Journal Assignment Week 3
Complement of a Strand
cat sequence_file | grep "aggta" prokaryote.txt | sed "s/aggta/tccat/g" prokaryote.txt
Reading Frames
+1 Reading Frame:
cat prokaryote.txt | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
+2 Reading Frame:
cat prokaryote.txt | sed "s/^./ /g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
+3 Reading Frame:
cat prokaryote.txt | sed "s/^../ /g" | sed "s/.../& /g" | sed "s/t/u/g" | sed -f genetic-code.sed
Reverse Reading Frames:
-1 Reading Frame:
-2 Reading Frame:
-3 REading Frame:
