Difference between revisions of "Kevinmcgee Week 5"
From LMU BioDB 2013
Kevinmcgee (Talk | contribs) (Added part of uniprot exercise) |
Kevinmcgee (Talk | contribs) (updated Uniprot) |
||
| Line 1: | Line 1: | ||
| − | ==Uniprot Exercise | + | ==Uniprot Exercise== |
# | # | ||
| − | *EMBL stands for European Molecular Biology Lab. It is a database that holds a large amount of protein/gene databases. | + | *EMBL stands for European Molecular Biology Lab. It is a database that holds a large amount of protein/gene databases. Similar to Genbank and DDBJ |
*InterPro is a database for protein sequence, analysis, and classification. Owned by the European Bioinformatics Institute (EBI). | *InterPro is a database for protein sequence, analysis, and classification. Owned by the European Bioinformatics Institute (EBI). | ||
| Line 9: | Line 9: | ||
*On Uniprot, there are three different PDB databases. PDB stands for Protein Data Bank, and they contain 3D structures of proteins. | *On Uniprot, there are three different PDB databases. PDB stands for Protein Data Bank, and they contain 3D structures of proteins. | ||
| − | *Pfam | + | *Pfam is a collection of protein domains to easily look at the domains of a protein and what that tells us about that protein. |
| − | *RefSeq stands for Reference Sequence collection, which is a US owned database of protein, DNA, and gene sequences. | + | *RefSeq stands for Reference Sequence collection, which is a US owned database of protein, DNA, and gene sequences. It provides summaries and documents on the sequences it contains. |
*Geneid is a database that further identifies and describes the EFGR and how it relates to genes. For instance, it gives the location of EFGR on a chromosome, and how EFGR relates to patients with ling cancer. | *Geneid is a database that further identifies and describes the EFGR and how it relates to genes. For instance, it gives the location of EFGR on a chromosome, and how EFGR relates to patients with ling cancer. | ||
Revision as of 17:17, 24 September 2013
Uniprot Exercise
- EMBL stands for European Molecular Biology Lab. It is a database that holds a large amount of protein/gene databases. Similar to Genbank and DDBJ
- InterPro is a database for protein sequence, analysis, and classification. Owned by the European Bioinformatics Institute (EBI).
- On Uniprot, there are three different PDB databases. PDB stands for Protein Data Bank, and they contain 3D structures of proteins.
- Pfam is a collection of protein domains to easily look at the domains of a protein and what that tells us about that protein.
- RefSeq stands for Reference Sequence collection, which is a US owned database of protein, DNA, and gene sequences. It provides summaries and documents on the sequences it contains.
- Geneid is a database that further identifies and describes the EFGR and how it relates to genes. For instance, it gives the location of EFGR on a chromosome, and how EFGR relates to patients with ling cancer.
