Difference between revisions of "Template:User Page Link"
From LMU BioDB 2013
(→Mitchell Petredis: got rid of more " in links) |
(→Mitchell Petredis: more journal entry for week 9) |
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==[[user:mpetredi|'''Mitchell Petredis''']]== | ==[[user:mpetredi|'''Mitchell Petredis''']]== | ||
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| + | ===UniProt XML=== | ||
#Go to [[http://www.uniprot.org/taxonomy/complete-proteomes UniProt Complete Proteomes]] | #Go to [[http://www.uniprot.org/taxonomy/complete-proteomes UniProt Complete Proteomes]] | ||
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#*Prior to selecting a file type, make sure [[http://www.uniprot.org/uniprot/?query=organism%3a243277+keyword%3a1185&format=*&compress=yes compressed]] results are enabled by clicking on the link. | #*Prior to selecting a file type, make sure [[http://www.uniprot.org/uniprot/?query=organism%3a243277+keyword%3a1185&format=*&compress=yes compressed]] results are enabled by clicking on the link. | ||
#*select [[http://www.uniprot.org/uniprot/?query=organism%3a243277+keyword%3a1185&compress=yes&format=xml XML]] | #*select [[http://www.uniprot.org/uniprot/?query=organism%3a243277+keyword%3a1185&compress=yes&format=xml XML]] | ||
| + | #**Extract the .gz file by right-clicking on the file and scrolling to 7-zip/Extract here | ||
| + | |||
| + | ===GOA=== | ||
| + | |||
| + | #Go to [[http://www.ebi.ac.uk/GOA/downloads UniProt-GOA Downloads]] | ||
| + | #*Current/previous UniProt-GOA files are located [[ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/ here]]. NOTE: Google Chrome can't find the link, and redirects to [[http://www.ebi.ac.uk/ European Bionformatics Institute]] instead. | ||
Revision as of 16:28, 22 October 2013
Mitchell Petredis
UniProt XML
- Go to [UniProt Complete Proteomes]
- Choose a topic from the "Complete proteomes" list
- I picked [Bacteria]
- Pick a specimen from the list of results and click on "Complete proteome set" under its link.
- For this exercise, pick [Vibrio cholerae serotype O1 (strain 39315 / El Tor Inaba N16961)]
- Once on your specimen page, click on the yellow/orange box in the upper right hand corner called [Download] to choose a filetype
- Prior to selecting a file type, make sure [compressed] results are enabled by clicking on the link.
- select [XML]
- Extract the .gz file by right-clicking on the file and scrolling to 7-zip/Extract here
GOA
- Go to [UniProt-GOA Downloads]
- Current/previous UniProt-GOA files are located [here]. NOTE: Google Chrome can't find the link, and redirects to [European Bionformatics Institute] instead.
