Difference between revisions of "Laurmagee: Week 10"
From LMU BioDB 2013
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| − | # | + | #''The composite genome of the legume symbiont Sinorhizobium meliloti'' |
| − | #* | + | #*I used GoogleScholar and entered into the search bar, "Sinorhizobium meliloti". |
| − | + | ||
#*Give an overview of the results of the search. | #*Give an overview of the results of the search. | ||
#*How many results did you get? | #*How many results did you get? | ||
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#*Were these biological or technical replicates? | #*Were these biological or technical replicates? | ||
#*How many of each? | #*How many of each? | ||
| − | # | + | #''The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti'' |
| − | #* | + | #*I used GoogleScholar and entered into the search bar, "Sinorhizobium meliloti". |
| − | + | ||
#*Give an overview of the results of the search. | #*Give an overview of the results of the search. | ||
#*How many results did you get? | #*How many results did you get? | ||
Revision as of 17:26, 31 October 2013
- The composite genome of the legume symbiont Sinorhizobium meliloti
- I used GoogleScholar and entered into the search bar, "Sinorhizobium meliloti".
- Give an overview of the results of the search.
- How many results did you get?
- Give an assessment of how relevant the results were.
- Record the full bibliographic citation of the relevant paper(s), formatted according to the Guidelines for Literature Citations in a Scientific Paper.
- Create a link to the HTML version of your journal article on the publisher web site. Note that PubMed Central is not an actual publisher web site, but a secondary database of papers.
- Download the PDF file of the journal article, upload it to the wiki and link to it from your team's home page. Note that you can only upload the PDF file to our wiki if there are no copyright restrictions on the article. If there are copyright restrictions, then you will need to provide a link to the download on the publisher site.
- Use the genome sequencing article you found to perform a prospective search in the ISI Web of Science/Knowledge database.
- Give an overview of the results of the search.
- How many results did you get?
- Based on the titles and abstracts of the papers, what type of research directions have been taken now that the genome for that organism has been sequenced?
- The experiments must be measuring gene expression aka transcriptional profiling or transcription profiling by array. Microarrays can also be used for other types of experiments, but these won't be suitable for analysis.
- State which database you used (e.g., GoogleScholar, PubMed, ISI Web of Science/Knowledge). It may actually be easier to find the microarray data first and then find the corresponding journal article.
- State what you used as search terms and what type of search terms they were.
- Give an overview of the results of the search. How many results did you get?
- Give an assessment of how relevant the results were.
- Record the full bibliographic citation of the relevant papers, formatted according to the Guidelines for Literature Citations in a Scientific Paper.
- Create a link to the HTML version of the journal article on the publisher web site. Note that PubMed Central is not an actual publisher web site, but a secondary database of papers.
- Download the PDF file of the journal article, upload it to the wiki and link to it from your team's home page. Note that you can only upload the PDF file to our wiki if there are no copyright restrictions on the article. If there are copyright restrictions, then you will need to provide a link to the download on the publisher site.
- You must also link to the web site where the microarray data resides.
- Download the microarray dataset file, upload it to the wiki, and link to it on your individual and team pages. Remeber, microarray data is not centrally located on the web. Some major sources are:
- What experiment was performed?
- What was the "treatment" and what was the "control" in the experiment?
- Were replicate experiments of the "treatment" and "control" conditions conducted?
- Were these biological or technical replicates?
- How many of each?
- The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti
- I used GoogleScholar and entered into the search bar, "Sinorhizobium meliloti".
- Give an overview of the results of the search.
- How many results did you get?
- Give an assessment of how relevant the results were.
- Record the full bibliographic citation of the relevant paper(s), formatted according to the Guidelines for Literature Citations in a Scientific Paper.
- Create a link to the HTML version of your journal article on the publisher web site. Note that PubMed Central is not an actual publisher web site, but a secondary database of papers.
- Download the PDF file of the journal article, upload it to the wiki and link to it from your team's home page. Note that you can only upload the PDF file to our wiki if there are no copyright restrictions on the article. If there are copyright restrictions, then you will need to provide a link to the download on the publisher site.
- Use the genome sequencing article you found to perform a prospective search in the ISI Web of Science/Knowledge database.
- Give an overview of the results of the search.
- How many results did you get?
- Based on the titles and abstracts of the papers, what type of research directions have been taken now that the genome for that organism has been sequenced?
- The experiments must be measuring gene expression aka transcriptional profiling or transcription profiling by array. Microarrays can also be used for other types of experiments, but these won't be suitable for analysis.
- State which database you used (e.g., GoogleScholar, PubMed, ISI Web of Science/Knowledge). It may actually be easier to find the microarray data first and then find the corresponding journal article.
- State what you used as search terms and what type of search terms they were.
- Give an overview of the results of the search. How many results did you get?
- Give an assessment of how relevant the results were.
- Record the full bibliographic citation of the relevant papers, formatted according to the Guidelines for Literature Citations in a Scientific Paper.
- Create a link to the HTML version of the journal article on the publisher web site. Note that PubMed Central is not an actual publisher web site, but a secondary database of papers.
- Download the PDF file of the journal article, upload it to the wiki and link to it from your team's home page. Note that you can only upload the PDF file to our wiki if there are no copyright restrictions on the article. If there are copyright restrictions, then you will need to provide a link to the download on the publisher site.
- You must also link to the web site where the microarray data resides.
- Download the microarray dataset file, upload it to the wiki, and link to it on your individual and team pages. Remeber, microarray data is not centrally located on the web. Some major sources are:
- What experiment was performed?
- What was the "treatment" and what was the "control" in the experiment?
- Were replicate experiments of the "treatment" and "control" conditions conducted?
- Were these biological or technical replicates?
- How many of each?
