Difference between revisions of "Mpetredi Week 10"
From LMU BioDB 2013
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(→ArrayExpress: added top 3 results for ArrayExpress) |
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#*You'll get 33 results, as indicated [[http://www.ebi.ac.uk/arrayexpress/experiments/browse.html?keywords=transcription+profiling+by+array&organism=Sinorhizobium+meliloti&array=&exptype%5B%5D=&exptype%5B%5D= here]] | #*You'll get 33 results, as indicated [[http://www.ebi.ac.uk/arrayexpress/experiments/browse.html?keywords=transcription+profiling+by+array&organism=Sinorhizobium+meliloti&array=&exptype%5B%5D=&exptype%5B%5D= here]] | ||
#Click on [[http://www.ebi.ac.uk/arrayexpress/experiments/browse.html?keywords=transcription%20profiling%20by%20array&organism=Sinorhizobium%20meliloti&array=&exptype%5B0%5D=&exptype%5B1%5D=&sortby=assays&sortorder=descending Assays]] to sort by most to least number of assays. | #Click on [[http://www.ebi.ac.uk/arrayexpress/experiments/browse.html?keywords=transcription%20profiling%20by%20array&organism=Sinorhizobium%20meliloti&array=&exptype%5B0%5D=&exptype%5B1%5D=&sortby=assays&sortorder=descending Assays]] to sort by most to least number of assays. | ||
| − | + | #In highest ranking order by number of assays, these are the top 3 results: | |
| − | + | ##[[http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-785/?keywords=%22Transcription%20profling%20by%20array%22%20&organism=Sinorhizobium%20meliloti&array=&exptype%5B0%5D=&exptype%5B1%5D=&page=1&pagesize=50&sortby=assays&sortorder=descending Transcription profiling time series of Sinorhizobium meliloti in response to an osmotic upshift elicited by salt or sucrose]] 48 Assays | |
| + | ##[[http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-21745/?keywords=%22Transcription%20profling%20by%20array%22%20&organism=Sinorhizobium%20meliloti&array=&exptype%5B0%5D=&exptype%5B1%5D=&page=1&pagesize=50&sortby=assays&sortorder=descending A Sinorhizobium meliloti IAA-overproducing strain improves phosphate solubilization and Medicago plant yield]] 36 Assays | ||
| + | ##[[http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-703/?keywords=%22Transcription%20profling%20by%20array%22%20&organism=Sinorhizobium%20meliloti&array=&exptype%5B0%5D=&exptype%5B1%5D=&page=1&pagesize=50&sortby=assays&sortorder=descending Stringent response in S. meliloti]] 30 Assays | ||
{{Individual Assignment Categories}} | {{Individual Assignment Categories}} | ||
Revision as of 17:15, 31 October 2013
Contents |
Mitchell Petredis
[[Team Name]]
Microarray Papers
PubMed Results
- Go to [PubMed]
- Click on [Advanced]
- Using the builder, I used MeSH Terms for the first scroll box, followed by "Sinorhizobium meliloti"
- Second search term keep as follows: AND, Title, Microarray
- 3 results appear upon search.
- [Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression.]
- [Development of a lab-made microarray for analyzing the genetic diversity of nitrogen fixing symbionts Sinorhizobium meliloti and Sinorhizobium medicae.]
- [Metabolic capacity of Sinorhizobium (Ensifer) meliloti strains as determined by phenotype MicroArray analysis.]
ArrayExpress
- Go to [AssayExpress]
- Click on [Experiments]
- Type "transcription profiling by array" in the search box
- Use filter "By Organism" and select Sinorhizobium meliloti
- Click on "filter"
- You'll get 33 results, as indicated [here]
- Click on [Assays] to sort by most to least number of assays.
- In highest ranking order by number of assays, these are the top 3 results:
- [Transcription profiling time series of Sinorhizobium meliloti in response to an osmotic upshift elicited by salt or sucrose] 48 Assays
- [A Sinorhizobium meliloti IAA-overproducing strain improves phosphate solubilization and Medicago plant yield] 36 Assays
- [Stringent response in S. meliloti] 30 Assays
