Difference between revisions of "User:Kdahlquist"
From LMU BioDB 2013
Kdahlquist (Talk | contribs) (→GOA: link to arabidopsis) |
Kdahlquist (Talk | contribs) (→Gene Database Source Files: put in list of species for GOA) |
||
| Line 102: | Line 102: | ||
** [[Media:217288.A_thaliana_20131031.goa | 217288.A_thaliana_20131031.goa]] version 10/15/2013 6:54:00 AM | ** [[Media:217288.A_thaliana_20131031.goa | 217288.A_thaliana_20131031.goa]] version 10/15/2013 6:54:00 AM | ||
** [ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/217288.A_thaliana.goa Download link] | ** [ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/217288.A_thaliana.goa Download link] | ||
| + | * ''Escherichia coli'' | ||
| + | |||
| + | * ''Helicobacter pylori'' (strain ATCC 700392 / 26695) (Campylobacter pylori) | ||
| + | |||
| + | * ''Mycobacterium smegmatis'' (strain ATCC 700084 / mc(2)155) | ||
| + | |||
* ''Mycobacterium tuberculosis'' (strain ATCC 25618 / H37Rv) | * ''Mycobacterium tuberculosis'' (strain ATCC 25618 / H37Rv) | ||
** [[Media:30.M_tuberculosis_ATCC_25618_20131031.goa | 30.M_tuberculosis_ATCC_25618_20131031.goa]] version 10/15/2013 1:50:00 PM | ** [[Media:30.M_tuberculosis_ATCC_25618_20131031.goa | 30.M_tuberculosis_ATCC_25618_20131031.goa]] version 10/15/2013 1:50:00 PM | ||
** [ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/30.M_tuberculosis_ATCC_25618.goa Download link] | ** [ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/30.M_tuberculosis_ATCC_25618.goa Download link] | ||
| − | * ''Vibrio cholerae'' | + | * ''Plasmodium falciparum'' (isolate 3D7) |
| + | |||
| + | * ''Pseudomonas aerugenosa'' (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) | ||
| + | |||
| + | * ''Salmonella typhimurium'' (strain LT2 / SGSC1412 / ATCC 700720) | ||
| + | |||
| + | * ''Staphylococcus aureus'' (strain MRSA252) | ||
| + | |||
| + | * ''Vibrio cholerae'' serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) | ||
** [[Media:46.V cholerae ATCC 39315-20131021.goa.zip | 46.V cholerae ATCC 39315-20131021.goa.zip]] | ** [[Media:46.V cholerae ATCC 39315-20131021.goa.zip | 46.V cholerae ATCC 39315-20131021.goa.zip]] | ||
Revision as of 21:43, 31 October 2013
Contents |
Kam D. Dahlquist, Ph.D.
Contact Information
Associate Professor Department of Biology Loyola Marymount University 1 LMU Drive, MS 8220 Los Angeles, CA 90045-2659 Tel: 310-338-7697 Fax: 310-338-4479 E-mail: kdahlquist at lmu dot edu Office: Seaver 218 Lab: Seaver 222
Office Hours (Fall 2013): Mondays, Tuesdays, and Thursdays 1:30-3:00 PM and by appointment
For more information about me, please see my web pages:
Education
- Ph.D., University of California, Santa Cruz, Molecular, Cellular, and Developmental Biology Program, March 2000
- B.A., Pomona College, Claremont, California, Biology, cum laude, May 1993
- Study Abroad Program, University College, Oxford University, Oxford, England, Specialized tutorial in Philosophy of Science, Fall 1991
Work Experience
- Affiliate Faculty, Bioethics Institute, Loyola Marymount University, Los Angeles, California, 2013-present
- William F. McLaughlin Chair of Biology, 2010–2012
- Associate Professor, Department of Biology, Loyola Marymount University, Los Angeles, California, 2009–present
- Assistant Professor, Department of Biology, Loyola Marymount University, Los Angeles, California, 2005–2009,
- Assistant Professor, Department of Biology, Vassar College, Poughkeepsie, New York, 2003–2005
- Postdoctoral Fellow, Gladstone Institute of Cardiovascular Disease, University of California, San Francisco, 2000–2003
- Adjunct Lecturer, Department of Biology, Santa Clara University, Santa Clara, California, Spring 2000
- Visiting Researcher, Department of Structural Biology, Stanford University, Stanford, California, 1997–2000
- Research Assistant, Department of Biology, University of California, Santa Cruz, California, 1994–1997
Personal Interests and Hobbies
- Reading science fiction
- Dance
- Needlework
- Cooking and baking
Gene Database Source Files
GO
- OBO XML .zip file
- Creation date of unzipped file: 2013-10-21 12:54:57 pm
UniProt XML
From UniProt release 2013_10 - October 16, 2013
- Arabidopsis thaliana
- Tax ID: 3702
- Arabidopsis_thaliana_UniProt_20131031.xml.gz
- Escherichia coli
- Tax ID: 83333 (includes MG1655 Tax ID 511145 and W3110 Tax ID 316407)
- Escherichia_coli_UniProt_20131031.xml.gz
- Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
- Tax ID: 85962
- Helicobacter_pylori_UniProt_20131029.xml.gz
- Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
- Tax ID 246196
- Mycobacterium_smegmatis_UniProt_20131029.xml.gz
- Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
- Tax ID 83332; looks like ID has changed to 1773 which designate just Mycobacterium tuberculosis
- Mycobacterium_tuberculosis_UniProt_20131031.xml.gz
- Plasmodium falciparum (isolate 3D7)
- Pseudomonas aerugenosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
- Tax ID 208964
- Pseudomonas_aerugenosa_UniProt_20131031.xml.gz
- Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
- Staphylococcus aureus (strain MRSA252)
- Tax ID 282458
- Staphylococcus_aureus_UniProt_20131031.xml.gz
- Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
- Tax ID 243277
- 46.V cholerae ATCC 39315-20131021.xml.zip
GOA
- Arabidopsis thaliana
- 217288.A_thaliana_20131031.goa version 10/15/2013 6:54:00 AM
- Download link
- Escherichia coli
- Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
- Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
- Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
- 30.M_tuberculosis_ATCC_25618_20131031.goa version 10/15/2013 1:50:00 PM
- Download link
- Plasmodium falciparum (isolate 3D7)
- Pseudomonas aerugenosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
- Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
- Staphylococcus aureus (strain MRSA252)
- Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
