Difference between revisions of "Sinorhizobium meliloti"

Revision as of 06:23, 1 November 2013

Team 4

Main Paper: The composite genome of the legume symbiont Sinorhizobium meliloti. Science 293, 668–672.

Personnel

Stephen Louie

Project Manager, Quality Assurance

slouie4 at lion.lmu.edu

1 LMU Drive MSB 5194

Los Angeles, CA 90045

Lauren Magee

GenMAPP Expert

lmagee1 at lion.lmu.edu

1 LMU Drive MSB-5258,

Los Angeles, CA 90045

Mitchell Petredis

Coding Supervisor

mrpetredis at gmail dot com

mpetredi at lion dot lmu dot edu

Loyola Marymount University

1 LMU Drive MSB-5957

Los Angeles, CA 90045-2659

Miles Malefyt

GenMAPP Coordinator

milesm@malefyt.com

mmalefyt@lion.lmu.edu

8416 Campion drive

Westchester, CA 90045

cell: 831-236-5402

Mmalefyt (talk) 10:31, 31 October 2013 (PDT)

Micro Array papers

• [Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression.]

• [Development of a lab-made microarray for analyzing the genetic diversity of nitrogen fixing symbionts Sinorhizobium meliloti and Sinorhizobium medicae.]

• Dual RpoH sigma factors
  • http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36186/?keywords=&organism=Sinorhizobium+meliloti&array=&exptype[]=&exptype[]=

• Osmotic upshift elicited by salt and sucrose
  • http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-785/?keywords=&organism=Sinorhizobium%20meliloti&array=&exptype[0]=&exptype[1]=&sortby=type&sortorder=ascending

• Expression in nitrogen stress response between wild and mutant types under high and low nitrogen availability
  • http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-43570/?keywords=&organism=Sinorhizobium%20meliloti&array=&exptype[0]=&exptype[1]=&sortby=type&sortorder=ascending

• [Development of a lab-made microarray for analyzing the genetic diversity of nitrogen fixing symbionts Sinorhizobium meliloti and Sinorhizobium medicae]

• [A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti]

Citations

Xavier Bailly, Gilles Béna, Vanina Lenief, Philippe de Lajudie, Jean-Christophe Avarre, Development of a lab-made microarray for analyzing the genetic diversity of nitrogen fixing symbionts Sinorhizobium meliloti and Sinorhizobium medicae, Journal of Microbiological Methods, Volume 67, Issue 1, October 2006, Pages 114-124, ISSN 0167-7012, http://dx.doi.org/10.1016/j.mimet.2006.03.006. (http://www.sciencedirect.com/science/article/pii/S0167701206000662)

Jan-Philip Schlüter, Jan Reinkensmeier, Svenja Daschkey, Elena Evguenieva-Hackenberg, Stefan Janssen, Sebastian Jänicke, Jörg D Becker, Robert Giegerich, Anke Becker, A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti BMC Genomics. 2010; 11: 245. Published online 2010 April 17. doi: 10.1186/1471-2164-11-245 PMCID: PMC2873474 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2873474/

More microarray papers can be found at mpetredi Week 10