Difference between revisions of "Taur.vil Week 12"
From LMU BioDB 2013
(→G54: finished through export) |
(→Lab Journal: R6 strain as well) |
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**Extracted files using 7zip and imported extracted file into gmbuilder | **Extracted files using 7zip and imported extracted file into gmbuilder | ||
**Took 12.64 minutes to import and 10.63 minutes to process | **Took 12.64 minutes to import and 10.63 minutes to process | ||
| − | *Exported file to title: | + | *Exported file to title: 20131113_G45export_tATK_TPV.gdb |
**Took less than 2h | **Took less than 2h | ||
*Uploaded export to wiki: [[Media:20131113 G45export tATK TPV.gdb]] | *Uploaded export to wiki: [[Media:20131113 G45export tATK TPV.gdb]] | ||
| − | + | ===R6=== | |
| − | + | *Created new database in pgAdminIII titled: tATK_R6_20131113 | |
| + | *Ran SQL, opened gmbuilder.sql and executed | ||
| + | **Produced the expect 159 tables | ||
| + | *Configured gmbuilder-32bit.bat to connect with the database | ||
| + | *Imported the XML file 20131105_UniProtXML_tATK_R6_AJV.xml which can be found on our [[Streptococcus pneumoniae|team page]]. | ||
| + | **Import took 5.16 minutes | ||
| + | *Imported go-obo file extracted during G54 | ||
| + | **Took 12.67min to upload and 10.06min to process. | ||
| + | *Imported goa file 20131107_UniProtXML_tATK_R6_AJV.goa | ||
| + | **Import took 0.04min | ||
| + | *Exported file to 20131113_R6export_tATK_TPV.gdb | ||
| + | **Took less than an hour | ||
| + | *Uploaded export to wiki: [[Media:20131113 R6export tATK TPV.gdb]] | ||
{{Taur.vil}} | {{Taur.vil}} | ||
Revision as of 07:51, 14 November 2013
Week 12 Individual Journal
Lab Journal
G54
- Downloaded GM Builder 2.0b71 for my personal computer from [1]
- On my personal computer created new database in PgAdminIII titled: tATK_G54_20131113
- Ran SQL, opened gmbuilder.sql and executed
- Produced the expect 159 tables
- Configured gmbuilder-32bit.bat to connect with the database
- Imported the XML file 20131107_UniProtXML_tATK_G54_AJV.xml which can be found on our team page.
- Took 2.98 minutes
- Imported the goa file 20131107_UniProtXML_tATK_G54_AJV.goa (also on our team page)
- Took 0.05 minutes
- Downloaded the compressed go-obo file 20131107_GO-OBO_tATK_KM.gz from the team page.
- Extracted files using 7zip and imported extracted file into gmbuilder
- Took 12.64 minutes to import and 10.63 minutes to process
- Exported file to title: 20131113_G45export_tATK_TPV.gdb
- Took less than 2h
- Uploaded export to wiki: Media:20131113 G45export tATK TPV.gdb
R6
- Created new database in pgAdminIII titled: tATK_R6_20131113
- Ran SQL, opened gmbuilder.sql and executed
- Produced the expect 159 tables
- Configured gmbuilder-32bit.bat to connect with the database
- Imported the XML file 20131105_UniProtXML_tATK_R6_AJV.xml which can be found on our team page.
- Import took 5.16 minutes
- Imported go-obo file extracted during G54
- Took 12.67min to upload and 10.06min to process.
- Imported goa file 20131107_UniProtXML_tATK_R6_AJV.goa
- Import took 0.04min
- Exported file to 20131113_R6export_tATK_TPV.gdb
- Took less than an hour
- Uploaded export to wiki: Media:20131113 R6export tATK TPV.gdb
- As part of Biological Databases
Please Remember the Harassing of Deities is Strictly Prohibited
Never Forget Samson
