Difference between revisions of "Team H(oo)KD Week 12 Status Report"
From LMU BioDB 2013
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==Coder Status Update== | ==Coder Status Update== | ||
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| + | *Began the gene database import export cycle: | ||
| + | :*Downloaded the UniProt XML file for ''Chlamydia trachomatis''' serovar A strain HAR-13. | ||
| + | :*Downloaded the GOA file for ''Chlamydia trachomatis''' serovar A. | ||
| + | :*I was able to import both the UniProt XML file and the GOA file for the ''C. trachomatis'' into gmbuilder-32bit.bat. While I was also able to import the OBO-XML file, I could not finish processing the data. After gmbuilder processed the 81000 term, I received the following error after which gmbuilder ceased the processing of the OBO-XML file: | ||
| + | ERROR edu.lmu.xmlpipedb.gmbuilder.GenMAPPBuilder - java.util.concurrent.ExecutionException: java.lang.OutOfMemoryError: | ||
| + | Java heap space | ||
==QA Status Update== | ==QA Status Update== | ||
Revision as of 06:06, 15 November 2013
| Project Manager/Coder: Katrina Sherbina | Quality Assurance: Hilda Delgadillo | GenMAPP User: Dillon Williams |
| Project Guidelines: | Gene Database Project | Report Guidelines | |
| Team Journal Assignments | Week 12 Status Report | Week 13 Status Report | Week 15 Status Report |
| Individual Status Reports: | HDelgadi Project Notebook | dwilliams Project Notebook | Ksherbina Project Notebook |
| Useful Links: | Class Page | Team Home Page |
| Final Product | Project Deliverables |
Coder Status Update
- Began the gene database import export cycle:
- Downloaded the UniProt XML file for Chlamydia trachomatis' serovar A strain HAR-13.
- Downloaded the GOA file for Chlamydia trachomatis' serovar A.
- I was able to import both the UniProt XML file and the GOA file for the C. trachomatis into gmbuilder-32bit.bat. While I was also able to import the OBO-XML file, I could not finish processing the data. After gmbuilder processed the 81000 term, I received the following error after which gmbuilder ceased the processing of the OBO-XML file:
ERROR edu.lmu.xmlpipedb.gmbuilder.GenMAPPBuilder - java.util.concurrent.ExecutionException: java.lang.OutOfMemoryError: Java heap space
QA Status Update
- Obtaining the files GOA file, UniProt XML file, and the GO OBO-XML file were essential to obtain this week. With these files we will begin the importing and exporting of the files Friday November 15th, so we may continue with the exporting of files into the GenMAPP Gene Database next week.
HDelgadi (talk) 10:46, 14 November 2013 (PST)
