Difference between revisions of "Kevinmcgee Week 13"
From LMU BioDB 2013
Kevinmcgee (Talk | contribs) (Added info to journal) |
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#Finished the formatting by flipping the dye swap chips negative | #Finished the formatting by flipping the dye swap chips negative | ||
##Created a column next to dye swap chips and did the formula: | ##Created a column next to dye swap chips and did the formula: | ||
| − | + | ##* =-1*(dye swap chip column) | |
| + | #made a new sheet | ||
| + | ##added all data from old sheet except only added the flipped dye swaps | ||
#looked for background information in the array paper | #looked for background information in the array paper | ||
##L. infantum MHOM/MA/67/ITMAP-263 and L. major LV39 MRHO/SU/59/P strains used in this study | ##L. infantum MHOM/MA/67/ITMAP-263 and L. major LV39 MRHO/SU/59/P strains used in this study | ||
| Line 8: | Line 10: | ||
##*The series accession number for our manuscript is GSE10407. | ##*The series accession number for our manuscript is GSE10407. | ||
##Each chip compares promastigote vs. amastigote with different replicates | ##Each chip compares promastigote vs. amastigote with different replicates | ||
| + | ##Following data files found | ||
| + | ##* GSM291421 L. infantum MOHM/MA/67/ITMAP-263 promastigote vs intracellular amastigote_replicate 1 | ||
| + | ##* GSM291422 L. infantum MOHM/MA/67/ITMAP-263 promastigote vs intracellular amastigote_replicate 2 | ||
| + | ##* GSM291423 L. infantum MOHM/MA/67/ITMAP-263 promastigote vs intracellular amastigote_replicate 3 | ||
| + | ##* GSM291424 L. infantum MOHM/MA/67/ITMAP-263 promastigote vs intracellular amastigote_replicate 4 | ||
| + | ##* GSM291425 L. infantum MOHM/MA/67/ITMAP-263 promastigote vs intracellular amastigote_replicate 5 | ||
| + | ##* GSM291426 L. infantum MOHM/MA/67/ITMAP-263 promastigote vs intracellular amastigote_replicate 6 | ||
| + | ##* GSM291427 L.major LV39 promastigote vs intracellular amastigote_replicate 1 | ||
| + | ##* GSM291428 L.major LV39 promastigote vs intracellular amastigote_replicate 2 | ||
| + | ##* GSM291429 L.major LV39 promastigote vs intracellular amastigote_replicate 3 | ||
| + | ##* GSM291430 L.major LV39 promastigote vs intracellular amastigote_replicate 4 | ||
Revision as of 18:38, 19 November 2013
- Opened L.infantumCompliedRawData(A).txt
- Finished the formatting by flipping the dye swap chips negative
- Created a column next to dye swap chips and did the formula:
- =-1*(dye swap chip column)
- Created a column next to dye swap chips and did the formula:
- made a new sheet
- added all data from old sheet except only added the flipped dye swaps
- looked for background information in the array paper
- L. infantum MHOM/MA/67/ITMAP-263 and L. major LV39 MRHO/SU/59/P strains used in this study
- All microarray data will be freely available on the Geo NCBI database in the MIAME format
- The series accession number for our manuscript is GSE10407.
- Each chip compares promastigote vs. amastigote with different replicates
- Following data files found
- GSM291421 L. infantum MOHM/MA/67/ITMAP-263 promastigote vs intracellular amastigote_replicate 1
- GSM291422 L. infantum MOHM/MA/67/ITMAP-263 promastigote vs intracellular amastigote_replicate 2
- GSM291423 L. infantum MOHM/MA/67/ITMAP-263 promastigote vs intracellular amastigote_replicate 3
- GSM291424 L. infantum MOHM/MA/67/ITMAP-263 promastigote vs intracellular amastigote_replicate 4
- GSM291425 L. infantum MOHM/MA/67/ITMAP-263 promastigote vs intracellular amastigote_replicate 5
- GSM291426 L. infantum MOHM/MA/67/ITMAP-263 promastigote vs intracellular amastigote_replicate 6
- GSM291427 L.major LV39 promastigote vs intracellular amastigote_replicate 1
- GSM291428 L.major LV39 promastigote vs intracellular amastigote_replicate 2
- GSM291429 L.major LV39 promastigote vs intracellular amastigote_replicate 3
- GSM291430 L.major LV39 promastigote vs intracellular amastigote_replicate 4
