Difference between revisions of "Kevinmcgee Week 13"
From LMU BioDB 2013
Kevinmcgee (Talk | contribs) (Added info to journal) |
Kevinmcgee (Talk | contribs) (Added pic) |
||
| Line 11: | Line 11: | ||
##Each chip compares promastigote vs. amastigote with different replicates | ##Each chip compares promastigote vs. amastigote with different replicates | ||
##Following data files found | ##Following data files found | ||
| − | + | [[File:LmjSampleInfo.PNG]] | |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
#Finished naming sheet with helpful names to know what is what on the sheet | #Finished naming sheet with helpful names to know what is what on the sheet | ||
#Ready for statistical analysis | #Ready for statistical analysis | ||
Revision as of 18:51, 19 November 2013
- Opened L.infantumCompliedRawData(A).txt
- Finished the formatting by flipping the dye swap chips negative
- Created a column next to dye swap chips and did the formula:
- =-1*(dye swap chip column)
- Created a column next to dye swap chips and did the formula:
- made a new sheet
- added all data from old sheet except only added the flipped dye swaps
- looked for background information in the array paper
- L. infantum MHOM/MA/67/ITMAP-263 and L. major LV39 MRHO/SU/59/P strains used in this study
- All microarray data will be freely available on the Geo NCBI database in the MIAME format
- The series accession number for our manuscript is GSE10407.
- Each chip compares promastigote vs. amastigote with different replicates
- Following data files found
- Finished naming sheet with helpful names to know what is what on the sheet
- Ready for statistical analysis
