Difference between revisions of "Leishmania major Week 13 Status Report"
From LMU BioDB 2013
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===[[User:Lena|Lena Hunt]]=== | ===[[User:Lena|Lena Hunt]]=== | ||
1.)We got our database to export into GenMAPP. Originally it was showing a generic database, and it wouldn't recognize the OrderedLocusNames. We fixed it in Eclipse and uploaded it to the homepage. We then ran GenMapp successfully. | 1.)We got our database to export into GenMAPP. Originally it was showing a generic database, and it wouldn't recognize the OrderedLocusNames. We fixed it in Eclipse and uploaded it to the homepage. We then ran GenMapp successfully. | ||
| + | : | ||
| + | We also updated our microarray data so that the gene IDs did not have extra numbers (we used the : as a separator.) | ||
2.) | 2.) | ||
3.) | 3.) | ||
Revision as of 18:17, 21 November 2013
Contents |
Import/Export GenMAPP
Name:Leishmania_major_18112013
Export Information
- Uniprot: 7.42 minutes
- File:UniprotXML Leishmania 05112013 Gabe Lena.xml
- GO OBO: 5.96 minutes
- File:Leishmania 05112013 Gabe Lena.obo-xml.gz
- GOA: 0.04 minutes
- File:LeishmaniaGOA 19112013 Lena Gabe.goa
Tally Engine
Original Row Counts Comparison
Reflections
Lena Hunt
1.)We got our database to export into GenMAPP. Originally it was showing a generic database, and it wouldn't recognize the OrderedLocusNames. We fixed it in Eclipse and uploaded it to the homepage. We then ran GenMapp successfully.
We also updated our microarray data so that the gene IDs did not have extra numbers (we used the : as a separator.) 2.) 3.)
GenMAPP Data
- Adjusted the dye swaps
- renamed the samples and compiled the microarray data or each species.
- Data now ready for statistical analysis
